Non-Coding RNA Search

Ss1.1-Ova1-OVR010002E09.5.110

Sequence:


               
               GACAGCGTCTCAGGAGAGCTCGAGACGCACCCCCAGCCAGCCATGGCCCGGTTCTTCCGG
GCATCCTGCCTTATCTCCCTGCTCCTGGCCGGCTTCCTCCCGCCGAGCCGGGGACAGGAG
AAGTCGAAGACGGACTGCTATCGCGGTGTGAGTGGCACCATCTATGAGTATGGAGCCCTC
ACCATCGACGGGGAGGAGTACATCCCTTTTAAGAAGTACGCTGGCAAATACGTCCTCTTT
GTCAACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACGTTGAACTGAATGCACTGCAG
GAAGAGTTTGAACCCTTTGGCCTCGTCATTCTGGGCTTCCCCTGCAACCAATTTGGAAAA
CAGGAACCGGGAGACAACTCGGAGATTCTGTCCACTCTCAGGTATGTCCGACCAGGTGGG
GGCTTCATCCCCAATTTCCAGCTCTTTGAGAAAGGGGACGTGAACGGGGAGAAGGAGCAG
AAGTTCTACACGTTCCTGAAGAACGCCTGTCCTCCTACTTCGGAGCTCCTGGGCTCACCG
AGCCGCCTATTCTGGGAACCCATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTC
CTGGTGGGGCCCGACGGTGTGCCCGTCATGCGCTGGTACCACCGCACCACCATCAACACT
GTCAAGCTGGACATCCTGGCCTACATGCGGCGGCGGGCAGCCCTGGAGGCCAAGCGGCAG
TAATGGAGGCCCACCCCACCCTGTGCCCACCCCACAGGGGCTGGGGAGGACTCTGTTCAG
GAAGGAATCCATTTCTACAACCACACCGCTGTCCCCTGCTAGACCCCTCACTAGGACACA
AGGGCCCAGCCCGACAGGAAGGTGTGCACACAACTGTGTCTGTACTGCTGTGCTTGTGAG
CATGTGCATGCGTGCCTACAGGTGTGTGTGATCACAGGAGTGCACTGCCACTTACAGGCG
TGGCGACCTGCAGGAATCCCCAGGCCTGTAAGTGTGCCCACAGCTGTGTGCCGGGGGCGG
GGTGCCGGAGCGTCACTCGCCTCTCGCTCTGGTTCTCTGCTCCAATGATCACAACTCACT
TTCAGTGAGCCCAAAGGAAAAAACCAGTTCTAGATTCAATTGGTCTGCTCTAACCTGGAC
TTTAGCCCTTGGGGCCGGCATCTCCCACTGTCTCCAGACACCACCAGTGAAGTGCCCAGA
AGCTTCTGGGTCTGCCACACAGCCCTCCTCTCCCCGACATGGCCTCTCTCCTTCCTGAGG
GCCCTCTCAAGCCCCCTGCCCCACCCCACAGTGTTCCCTGAGAGCAGCCAAGGCAGATGT
GAGAGCAAAGGCCACGATCCCAGTGTCAGGGGTGGCATCTTCATGAAGGAGGGGCCCGAA
GCCCTCATGGGCGGACCCCCCTTGAGCCTGTCTGAAGGTCTGGCCCTTCGTGCATTCAGG
CCAAGGCCCCCAGGCAGAGATGCCACCACTGCTCCTTCGGGGGATGTGTCCTCTCCCCTC
GCCCTGACCTGCTGGCATTAGACTCACCCCGTGTACCTAGTAAAGGCCTTTCTGCAGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGCGTCTCAGGAGAGCTCGAGACGCACCCCCAGCCAGCCATGGCCCGGTTCTTCCGG
GCATCCTGCCTTATCTCCCTGCTCCTGGCCGGCTTCCTCCCGCCGAGCCGGGGACAGGAG
AAGTCGAAGACGGACTGCTATCGCGGTGTGAGTGGCACCATCTATGAGTATGGAGCCCTC
ACCATCGACGGGGAGGAGTACATCCCTTTTAAGAAGTACGCTGGCAAATACGTCCTCTTT
GTCAACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACGTTGAACTGAATGCACTGCAG
GAAGAGTTTGAACCCTTTGGCCTCGTCATTCTGGGCTTCCCCTGCAACCAATTTGGAAAA
CAGGAACCGGGAGACAACTCGGAGATTCTGTCCACTCTCAGGTATGTCCGACCAGGTGGG
GGCTTCATCCCCAATTTCCAGCTCTTTGAGAAAGGGGACGTGAACGGGGAGAAGGAGCAG
AAGTTCTACACGTTCCTGAAGAACGCCTGTCCTCCTACTTCGGAGCTCCTGGGCTCACCG
AGCCGCCTATTCTGGGAACCCATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTC
CTGGTGGGGCCCGACGGTGTGCCCGTCATGCGCTGGTACCACCGCACCACCATCAACACT
GTCAAGCTGGACATCCTGGCCTACATGCGGCGGCGGGCAGCCCTGGAGGCCAAGCGGCAG
TAATGGAGGCCCACCCCACCCTGTGCCCACCCCACAGGGGCTGGGGAGGACTCTGTTCAG
GAAGGAATCCATTTCTACAACCACACCGCTGTCCCCTGCTAGACCCCTCACTAGGACACA
AGGGCCCAGCCCGACAGGAAGGTGTGCACACAACTGTGTCTGTACTGCTGTGCTTGTGAG
CATGTGCATGCGTGCCTACAGGTGTGTGTGATCACAGGAGTGCACTGCCACTTACAGGCG
TGGCGACCTGCAGGAATCCCCAGGCCTGTAAGTGTGCCCACAGCTGTGTGCCGGGGGCGG
GGTGCCGGAGCGTCACTCGCCTCTCGCTCTGGTTCTCTGCTCCAATGATCACAACTCACT
TTCAGTGAGCCCAAAGGAAAAAACCAGTTCTAGATTCAATTGGTCTGCTCTAACCTGGAC
TTTAGCCCTTGGGGCCGGCATCTCCCACTGTCTCCAGACACCACCAGTGAAGTGCCCAGA
AGCTTCTGGGTCTGCCACACAGCCCTCCTCTCCCCGACATGGCCTCTCTCCTTCCTGAGG
GCCCTCTCAAGCCCCCTGCCCCACCCCACAGTGTTCCCTGAGAGCAGCCAAGGCAGATGT
GAGAGCAAAGGCCACGATCCCAGTGTCAGGGGTGGCATCTTCATGAAGGAGGGGCCCGAA
GCCCTCATGGGCGGACCCCCCTTGAGCCTGTCTGAAGGTCTGGCCCTTCGTGCATTCAGG
CCAAGGCCCCCAGGCAGAGATGCCACCACTGCTCCTTCGGGGGATGTGTCCTCTCCCCTC
GCCCTGACCTGCTGGCATTAGACTCACCCCGTGTACCTAGTAAAGGCCTTTCTGCAGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6UJZ1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6UJZ1_PIG

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               164-283, - strand, RNAz p=0.786116
               

               
               500-698, - strand, RNAz p=0.977341
               

               
               850-951, - strand, RNAz p=0.99949
               

               
               1148-1252, - strand, RNAz p=0.978762
               

               
               1326-1484, + strand, RNAz p=0.867651

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-283, - strand, RNAz p=0.786116
               

               
               500-698, - strand, RNAz p=0.977341
               

               
               850-951, - strand, RNAz p=0.99949
               

               
               1148-1252, - strand, RNAz p=0.978762
               

               
               1326-1484, + strand, RNAz p=0.867651

ncRNA annotation: 1 entry(ies)

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               1355-1418, , RaveNnA Score=21.06

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1355-1418, , RaveNnA Score=21.06

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC050378, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC050378, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               128-283, gnl|bosTau2|chr7 (42934391-42934546)
               

               
               128-283, gnl|Hg17|chr5 (150385092-150385247)
               

               
               128-283, gnl|Mm7|chr11 (54863882-54864037)
               


               
               500-1559, gnl|bosTau2|chr7 (42936842-42937886)
               

               
               500-1559, gnl|Hg17|chr5 (150387661-150388742)
               

               
               500-1559, gnl|Mm7|chr11 (54866192-54867134)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-283, gnl|bosTau2|chr7 (42934391-42934546)
               

               
               128-283, gnl|Hg17|chr5 (150385092-150385247)
               

               
               128-283, gnl|Mm7|chr11 (54863882-54864037)
               


               
               500-1559, gnl|bosTau2|chr7 (42936842-42937886)
               

               
               500-1559, gnl|Hg17|chr5 (150387661-150388742)
               

               
               500-1559, gnl|Mm7|chr11 (54866192-54867134)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               nje (2.98656)
               

               
               jej (1.58275)
               

               
               amn (1.25313)
               

               
               eje (1.18601)
               

               
               cov (1.05722)
               

               
               ton (0.702001)
               

               
               nep (0.551775)
               

               
               cki (0.330469)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (2.98656)
               

               
               jej (1.58275)
               

               
               amn (1.25313)
               

               
               eje (1.18601)
               

               
               cov (1.05722)
               

               
               ton (0.702001)
               

               
               nep (0.551775)
               

               
               cki (0.330469)
               

               
               eli (0.303628)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	164-283, - strand, RNAz p=0.786116
	500-698, - strand, RNAz p=0.977341
	850-951, - strand, RNAz p=0.99949
	1148-1252, - strand, RNAz p=0.978762
	1326-1484, + strand, RNAz p=0.867651

	128-283, gnl\|bosTau2\|chr7 (42934391-42934546)
	128-283, gnl\|Hg17\|chr5 (150385092-150385247)
	128-283, gnl\|Mm7\|chr11 (54863882-54864037)

	500-1559, gnl\|bosTau2\|chr7 (42936842-42937886)
	500-1559, gnl\|Hg17\|chr5 (150387661-150388742)
	500-1559, gnl\|Mm7\|chr11 (54866192-54867134)

	nje (2.98656)
	jej (1.58275)
	amn (1.25313)
	eje (1.18601)
	cov (1.05722)
	ton (0.702001)
	nep (0.551775)
	cki (0.330469)
	eli (0.303628)
	hyp (0.285673)
	nmm (0.265604)
	pgl (0.236967)
	mas (0.210305)
	nbm (0.198649)
	col (0.195008)
	lnt (0.142308)
	ute (0.132784)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)