Non-Coding RNA Search

Ss1.1-rmcp01c_l22.5

Sequence:


               
               CATCCTTCCCCCATCCCAAAGCAAATAGGTAAACATATAAATGAAAGAAGCCCACAGAAG
GGAGTGAGAAATAAATTTTTCCCAAGACTTCTCTAGACCATGTCACTGGTTGGTGTGGTT
TTCTGTGTCAAGGTTGGAAGATGTGAAGACATAAGTATCCAGTATTTTATAACCAAAGCA
ATTAAAAGGTATCGGGGAGGGAATGTTGGCCAGTTTTGTTTAGTTTTGCATCACATTATC
ACCAGACGCTATCACTAGCCCAAGTAATCGGGCACCCGAAGAGGGAGACGGAGATGTGCA
GAGGTTACCAATGTGCAAATGATAACTACTGACGAAAGAGTCAGTGGCTCAGTTAGTGGT
TGGATGTAGTCACATTCGTTTGCCTCTGCCCATCTCTGTCTCCCTAGCAAGGAGACTATT
CGGGGCACAATGCTATGAGTCCTGGGTAAATGTGGTGAGAATGCGTGTGTGTTTATCTCT
GCTTTTCAGTTGCAGAATCAGAAATGCTCTGGAGATTGCCAGTAGAAAGAGTGTAATTAT
ATGGGTGCTGAGTGGTACGTGTGCTTTTAAATTTGTTCTTGTATTTTAATAAACTTTGAA
TAAAAGAACAAAGTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCTTCCCCCATCCCAAAGCAAATAGGTAAACATATAAATGAAAGAAGCCCACAGAAG
GGAGTGAGAAATAAATTTTTCCCAAGACTTCTCTAGACCATGTCACTGGTTGGTGTGGTT
TTCTGTGTCAAGGTTGGAAGATGTGAAGACATAAGTATCCAGTATTTTATAACCAAAGCA
ATTAAAAGGTATCGGGGAGGGAATGTTGGCCAGTTTTGTTTAGTTTTGCATCACATTATC
ACCAGACGCTATCACTAGCCCAAGTAATCGGGCACCCGAAGAGGGAGACGGAGATGTGCA
GAGGTTACCAATGTGCAAATGATAACTACTGACGAAAGAGTCAGTGGCTCAGTTAGTGGT
TGGATGTAGTCACATTCGTTTGCCTCTGCCCATCTCTGTCTCCCTAGCAAGGAGACTATT
CGGGGCACAATGCTATGAGTCCTGGGTAAATGTGGTGAGAATGCGTGTGTGTTTATCTCT
GCTTTTCAGTTGCAGAATCAGAAATGCTCTGGAGATTGCCAGTAGAAAGAGTGTAATTAT
ATGGGTGCTGAGTGGTACGTGTGCTTTTAAATTTGTTCTTGTATTTTAATAAACTTTGAA
TAAAAGAACAAAGTTAAAAAAAAA

ncRNA annotation: 1 entry(ies)

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               311-375, RF00031;SECIS; (AC007372.4/44477-44413), RaveNnA Score=24.13

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               311-375, RF00031;SECIS; (AC007372.4/44477-44413), RaveNnA Score=24.13

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               pgl (0.118483)