Non-Coding RNA Search

Ss1.1-Pig4-TMW8017B10.3

Sequence:


               
               GTGAAGCTGCTGTCGCTATAATGTCGGGAAGAGGCAAACAGGGAGGCAAAGCTCGCGCCA
AGGCCAAGACTCGCTCCTCGCGGGCCGGGCTCCAGTTCCCGGTGGGTCGAGTGCACCGCC
TGCTCCGCAAGGGCAACTATGCCGAGCGGGTCGGCGCCGGCGCGCCGGTGTACTTGGCGG
CGGTGCTGGAGTACCTGACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACA
ACAAGAAGACGCGCATCATCCCGCGCCACTTGCAGCTGGCCATCCGCAACGACGAGGAGC
TCAACAAGCTGCTGGGCAAGGTCACTATCGCTCAGGGCGGTGTCTTGCCCAACATCCAAG
CGGTGTTGCTGCCCAAGAAGACCGAGAGCCACCACAAGGCCAAGGGCAAGTAATGGCCTA
GATTTCGGCGACACGCATCAAACCAAACCAAAGGCTCTTTTCAGAGCCACCCACATTTTC
TGGAAAAGAACTTAACATCTATCTTGTTTGGGAAGATGAAAAGAGATTTAATGTGAAAAT
TTCCTTAACTTCTAGTTTGGTCAAGTCGAAGTGTGGTAAAAGGCTTCATATTTGAATTAA
AAAGTAAAATGACTTCATAATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAGCTGCTGTCGCTATAATGTCGGGAAGAGGCAAACAGGGAGGCAAAGCTCGCGCCA
AGGCCAAGACTCGCTCCTCGCGGGCCGGGCTCCAGTTCCCGGTGGGTCGAGTGCACCGCC
TGCTCCGCAAGGGCAACTATGCCGAGCGGGTCGGCGCCGGCGCGCCGGTGTACTTGGCGG
CGGTGCTGGAGTACCTGACGGCCGAGATCCTGGAGCTGGCGGGCAACGCGGCCCGCGACA
ACAAGAAGACGCGCATCATCCCGCGCCACTTGCAGCTGGCCATCCGCAACGACGAGGAGC
TCAACAAGCTGCTGGGCAAGGTCACTATCGCTCAGGGCGGTGTCTTGCCCAACATCCAAG
CGGTGTTGCTGCCCAAGAAGACCGAGAGCCACCACAAGGCCAAGGGCAAGTAATGGCCTA
GATTTCGGCGACACGCATCAAACCAAACCAAAGGCTCTTTTCAGAGCCACCCACATTTTC
TGGAAAAGAACTTAACATCTATCTTGTTTGGGAAGATGAAAAGAGATTTAATGTGAAAAT
TTCCTTAACTTCTAGTTTGGTCAAGTCGAAGTGTGGTAAAAGGCTTCATATTTGAATTAA
AAAGTAAAATGACTTCATAATGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q76PA6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q76PA6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               47-206, - strand, RNAz p=0.54717
               

               
               367-480, - strand, RNAz p=0.997365

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-206, - strand, RNAz p=0.54717
               

               
               367-480, - strand, RNAz p=0.997365

ncRNA annotation: 1 entry(ies)

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               448-473, , RaveNnA Score=39.41

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               448-473, , RaveNnA Score=39.41

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-480, gnl|bosTau2|chr12 (1673242-1672764)
               

               
               7-480, gnl|Mm7|chr13 (22899896-22900374)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-480, gnl|bosTau2|chr12 (1673242-1672764)
               

               
               7-480, gnl|Mm7|chr13 (22899896-22900374)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               mcp (0.170648)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               mcp (0.170648)

	47-206, - strand, RNAz p=0.54717
	367-480, - strand, RNAz p=0.997365

	7-480, gnl\|bosTau2\|chr12 (1673242-1672764)
	7-480, gnl\|Mm7\|chr13 (22899896-22900374)