Non-Coding RNA Search

Ss1.1-Emb1-C0005216_A11.5

Sequence:


               
               TGTAAGTAGTACGAAATAACTAAAAAATAAGAGGAAAAAATATTGAATGGCATCCGAGGA
TCATACATGAATATTGGTCAGTATTAACATCTCGGGAGTTCCCAGGTGGCTCAGCAGGTT
CAGAACCTGGTGTTTTCACTGCTGTGGCTCAGGTTCCATCCCTGGCCTGGGAATTTTTGT
ATGCAGCCAAAAGAAGAAAAAAATTAACATCTCGATTTTGATGGTTATCCAGCAGTTACC
TGGTAGAGTCCCCTCATAAATAGGAACTATACATTGGAATATTAGTAAATAATGGATCAT
GATGCCTGTGATTTATGTACAGAAATGTTCATTAATTGGAATTCTGGTACAAGGGCAAAT
AGTACTGTGGCCTATTTCTACAACTTTTATGTACACCTGAAATTGTTTCACAATAAAATG
TTTCAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAAGTAGTACGAAATAACTAAAAAATAAGAGGAAAAAATATTGAATGGCATCCGAGGA
TCATACATGAATATTGGTCAGTATTAACATCTCGGGAGTTCCCAGGTGGCTCAGCAGGTT
CAGAACCTGGTGTTTTCACTGCTGTGGCTCAGGTTCCATCCCTGGCCTGGGAATTTTTGT
ATGCAGCCAAAAGAAGAAAAAAATTAACATCTCGATTTTGATGGTTATCCAGCAGTTACC
TGGTAGAGTCCCCTCATAAATAGGAACTATACATTGGAATATTAGTAAATAATGGATCAT
GATGCCTGTGATTTATGTACAGAAATGTTCATTAATTGGAATTCTGGTACAAGGGCAAAT
AGTACTGTGGCCTATTTCTACAACTTTTATGTACACCTGAAATTGTTTCACAATAAAATG
TTTCAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

ncRNA annotation: 1 entry(ies)

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               100-173, tRNA Glu : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=34.95

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               100-173, tRNA Glu : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=34.95

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               ebs (0.118301)

	fbs (0.175346)
	cut (0.169924)
	fhi (0.169578)
	lnt (0.142308)
	ebs (0.118301)