Ss1.1-Pig4-TMW8060L12.3
|
TTGGCATTATATTTAATAGGTTGGATTTAACTTGTGAGAGATTAAAGCAGAAAGATTAGT
TAAGAGGTAGTGAAAATACTTTTTAAAGAAAATAATGAAGGCATTCTCTGGTGGTCTAGT
GGTTAGGACTTGGTGCTTCAACCACTGCAGCCTGGGTTCAGTCCCTGGTCTGGGAGCTGA
GATCGCACATCAAGCCACTGCATGCTGTGGCCAAAACAATAATAATAATAAATTTAAAAA
AATAATGAAACCTGAATGCAGTAGGAATAAAAAATGGAGACCAGAGTAGGTGGATTAGCA
AGACATTTCAGAAACGGAATCTGCATATTCTGTTCCTAGATCATGGAGATAAGAGGTGAG
GACCAGTGCAGTCACTGATGACTCCACAGTCCCTGCTTGGTTGACTACCTGGAGGGGCGG
CAAAGATGGGGAGGAGGTTGGGGACAAGAAGGGAGGGTAATGAGTTTGACACACAGACTT
AAGTATATCCAGATGGAAGTATATGGTTGACAAGACAATTAGAAATAGAGACCTGGGACT
TAGGAGGGAGCCGAAAAAGACAGACTTGGGAGCTGGCTATGCGGAGACGATGCCTGAGTG
CACCAGCGTAGACTGGATCATTTCAGCAGGAACACCAGTGAGAAAAAAGGAGGTCCAAGG
ATGAGCCCTCATACAACACTTGCATTTGAAGAACCAGAAGCTGAACCAGTGAAAAAGATC
AATCCTAGAAGAGACATTAGAGTATAGTGGTTTTGGAGAAAGAAGGCAGCATAGAGATGA
GAGGTACTCCAAAAGAAATCTCTGGAGAGAACATAAAATGAGAAGAAACCGATGGACTAG
TTGTATTGAAGCTTTTCTACAGGCAGTGGTGGTGGGGTCAGATTGCAGTGCTTTGAGGAA
AAGGATGCATGGTGGTGACCCTTCTTTGCTGGTACTTATTAGAGAAAAGAAATCACCAAA
GGTTGTATCTCTATCTGTCTGTCTATATGAGGATGAGTAGTTTTAAATATATTTGTCGGC
TGAAGAGAGGAAGGAGTTAAGCTGTTTTCACTTGGGAAAAATGGTATATATGGTCCATAT
TTTTAACCTGAATCGTCACATTGTACCGTAACATGTCTTATTTCATACATACATTTCTTA
CCTGAACATGCAGAAAATTACATTTGTTTGGTACTTATTAAGGACTTTCACATCCATTAC
CTCATTTTGCCTTTACAGGTACTTTGAAGTACCTCGGTCAGGTGCTATTCTTTGTATTCA
GATAAGAAAACTGAGCCTCATTGAGATAGAGGCTGAAATCACACAATCTGTAATAAAGAT
TTGACCCCAAAAAAAAAAAAAAAAAATCTCATTTCAGATTTTACAGTGAATCAAAGCTAT
CTAAGTTTTTACCACTTTGTTTAAATATCATGTATTCATATACTCAGAAATTTTGTTTAG
GTATTAGCGTAGGTTAAAAATATAGCTGTAGGAGTTCCCTTCAAATCTGACTATCCATGA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTGGCATTATATTTAATAGGTTGGATTTAACTTGTGAGAGATTAAAGCAGAAAGATTAGT
TAAGAGGTAGTGAAAATACTTTTTAAAGAAAATAATGAAGGCATTCTCTGGTGGTCTAGT
GGTTAGGACTTGGTGCTTCAACCACTGCAGCCTGGGTTCAGTCCCTGGTCTGGGAGCTGA
GATCGCACATCAAGCCACTGCATGCTGTGGCCAAAACAATAATAATAATAAATTTAAAAA
AATAATGAAACCTGAATGCAGTAGGAATAAAAAATGGAGACCAGAGTAGGTGGATTAGCA
AGACATTTCAGAAACGGAATCTGCATATTCTGTTCCTAGATCATGGAGATAAGAGGTGAG
GACCAGTGCAGTCACTGATGACTCCACAGTCCCTGCTTGGTTGACTACCTGGAGGGGCGG
CAAAGATGGGGAGGAGGTTGGGGACAAGAAGGGAGGGTAATGAGTTTGACACACAGACTT
AAGTATATCCAGATGGAAGTATATGGTTGACAAGACAATTAGAAATAGAGACCTGGGACT
TAGGAGGGAGCCGAAAAAGACAGACTTGGGAGCTGGCTATGCGGAGACGATGCCTGAGTG
CACCAGCGTAGACTGGATCATTTCAGCAGGAACACCAGTGAGAAAAAAGGAGGTCCAAGG
ATGAGCCCTCATACAACACTTGCATTTGAAGAACCAGAAGCTGAACCAGTGAAAAAGATC
AATCCTAGAAGAGACATTAGAGTATAGTGGTTTTGGAGAAAGAAGGCAGCATAGAGATGA
GAGGTACTCCAAAAGAAATCTCTGGAGAGAACATAAAATGAGAAGAAACCGATGGACTAG
TTGTATTGAAGCTTTTCTACAGGCAGTGGTGGTGGGGTCAGATTGCAGTGCTTTGAGGAA
AAGGATGCATGGTGGTGACCCTTCTTTGCTGGTACTTATTAGAGAAAAGAAATCACCAAA
GGTTGTATCTCTATCTGTCTGTCTATATGAGGATGAGTAGTTTTAAATATATTTGTCGGC
TGAAGAGAGGAAGGAGTTAAGCTGTTTTCACTTGGGAAAAATGGTATATATGGTCCATAT
TTTTAACCTGAATCGTCACATTGTACCGTAACATGTCTTATTTCATACATACATTTCTTA
CCTGAACATGCAGAAAATTACATTTGTTTGGTACTTATTAAGGACTTTCACATCCATTAC
CTCATTTTGCCTTTACAGGTACTTTGAAGTACCTCGGTCAGGTGCTATTCTTTGTATTCA
GATAAGAAAACTGAGCCTCATTGAGATAGAGGCTGAAATCACACAATCTGTAATAAAGAT
TTGACCCCAAAAAAAAAAAAAAAAAATCTCATTTCAGATTTTACAGTGAATCAAAGCTAT
CTAAGTTTTTACCACTTTGTTTAAATATCATGTATTCATATACTCAGAAATTTTGTTTAG
GTATTAGCGTAGGTTAAAAATATAGCTGTAGGAGTTCCCTTCAAATCTGACTATCCATGA |
|
105-176, tRNA SeC : RF00005;tRNA; (AC091401.2/144755-144826), RaveNnA
Score=30.41 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
105-176, tRNA SeC : RF00005;tRNA; (AC091401.2/144755-144826), RaveNnA
Score=30.41 |
|
bla (0.248694) |
|
ece (0.229305) |
|
rec (0.17307) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
spl (0.143184) |
|
csk (0.140746) |
|
ret (0.128733) |
|
thg (0.126791) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
bla (0.248694) |
|
ece (0.229305) |
|
rec (0.17307) |
|
tbr (0.154178) |
|
liv (0.146284) |
|
spl (0.143184) |
|
csk (0.140746) |
|
ret (0.128733) |
|
thg (0.126791) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
cty (0.10408) |
