Ss1.1-Pig4-TMW8046O15.5
|
CTGGGCTTTCTCTGACTCGCTGTAGTAATTCCAGCGAGAGGCAGAGGGAGCGAGCGGGCG
GGCCCTCCAGGGTGGAAGAGCAGAGCCGGCCGAGCAAGCTGAGTCGCGCTCTGGGCGCCC
GGGGGAAGGGAGATCCGGAGTGAAAGAGGGTCTTCGCCTCCGTCCCGGCCGCCCCCACCC
CACCCTGCCCGCCGACCCCTGCCAGCGGTCCGCCACCCGCGCCGCATCCACGAAACTTTG
CCCACTGCAGCGGGCGGGTACTTTCCACTGGAACTTACAACACCCGAGCGACAACGCGAC
TCTCCGGACGCGGAGAGGCTATTCTGCCTATTTGGGGAGACACTTTTCCCTGTCGCTGCC
CACGACTCGCTCCTCTGAAAGGCGCTCCTCGCCGCTTTTTGGACGCTGGATTTCCTTCGG
ATAGTGGAAAACCCGCAGGCTGCCGCGATGCCCCTCAACGTCAGCTTCACCAACAGGAAC
TATGACCTCGACTACGACTCGGTGCAGCCTTATTTCTACTGCGACGAGGAGGAGAACTTC
TACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCGCCGGCACCCAGCGAGGATATCTGGAAG
AAATTCGAGTTGCTGCCCACCCCGCCCCTGTCCCCGAGCCGCCGCTCCGGGCTCTGCTCG
CCCTCGTACGTCGCGGTCGCGTCCTTCTCCCCCAGTGAAGACGATGACGGCGGCGGCGGC |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGGGCTTTCTCTGACTCGCTGTAGTAATTCCAGCGAGAGGCAGAGGGAGCGAGCGGGCG
GGCCCTCCAGGGTGGAAGAGCAGAGCCGGCCGAGCAAGCTGAGTCGCGCTCTGGGCGCCC
GGGGGAAGGGAGATCCGGAGTGAAAGAGGGTCTTCGCCTCCGTCCCGGCCGCCCCCACCC
CACCCTGCCCGCCGACCCCTGCCAGCGGTCCGCCACCCGCGCCGCATCCACGAAACTTTG
CCCACTGCAGCGGGCGGGTACTTTCCACTGGAACTTACAACACCCGAGCGACAACGCGAC
TCTCCGGACGCGGAGAGGCTATTCTGCCTATTTGGGGAGACACTTTTCCCTGTCGCTGCC
CACGACTCGCTCCTCTGAAAGGCGCTCCTCGCCGCTTTTTGGACGCTGGATTTCCTTCGG
ATAGTGGAAAACCCGCAGGCTGCCGCGATGCCCCTCAACGTCAGCTTCACCAACAGGAAC
TATGACCTCGACTACGACTCGGTGCAGCCTTATTTCTACTGCGACGAGGAGGAGAACTTC
TACCAGCAGCAGCAGCAGAGCGAGCTGCAGCCGCCGGCACCCAGCGAGGATATCTGGAAG
AAATTCGAGTTGCTGCCCACCCCGCCCCTGTCCCCGAGCCGCCGCTCCGGGCTCTGCTCG
CCCTCGTACGTCGCGGTCGCGTCCTTCTCCCCCAGTGAAGACGATGACGGCGGCGGCGGC |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
27-356, RF00216;IRES_c-myc; (X97040.1/1238-1567), blast E-value=0 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
27-356, RF00216;IRES_c-myc; (X97040.1/1238-1567), blast E-value=0 |
|
3' of M13930, + |
|
5' of NM_002467, + |
Human gene identifier and UTR site,
human gene reading direction
|
3' of M13930, + |
|
5' of NM_002467, + |
|
1-430, gnl|bosTau2|chr14 (6561818-6562227) |
|
1-430, gnl|canFam2|chr13 (28237674-28238458) |
|
1-430, gnl|hg17|chr8 (128817379-128818085) |
|
1-430, gnl|Hg17|chr8 (128817646-128818046) |
|
1-430, gnl|loxAfr1|scaffold_40263 (10902-10174) |
|
1-430, gnl|mm7|chr15 (62059534-62060278) |
|
1-430, gnl|Mm7|chr15 (62059829-62060241) |
|
1-430, gnl|monDom2|scaffold_3 (25133068-25132273) |
|
1-430, gnl|oryCun1|scaffold_209512 (17200-16488) |
|
1-430, gnl|panTro1|chr7 (131513065-131513771) |
|
1-430, gnl|rheMac2|chr8 (130349008-130349716) |
|
1-430, gnl|rn3|chr7 (98987229-98987969) |
| |
|
432-720, gnl|bosTau2|chr14 (6563959-6564248) |
|
432-720, gnl|Hg17|chr8 (128819672-128819963) |
|
432-720, gnl|Mm7|chr15 (62061798-62062092) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-430, gnl|bosTau2|chr14 (6561818-6562227) |
|
1-430, gnl|canFam2|chr13 (28237674-28238458) |
|
1-430, gnl|hg17|chr8 (128817379-128818085) |
|
1-430, gnl|Hg17|chr8 (128817646-128818046) |
|
1-430, gnl|loxAfr1|scaffold_40263 (10902-10174) |
|
1-430, gnl|mm7|chr15 (62059534-62060278) |
|
1-430, gnl|Mm7|chr15 (62059829-62060241) |
|
1-430, gnl|monDom2|scaffold_3 (25133068-25132273) |
|
1-430, gnl|oryCun1|scaffold_209512 (17200-16488) |
|
1-430, gnl|panTro1|chr7 (131513065-131513771) |
|
1-430, gnl|rheMac2|chr8 (130349008-130349716) |
|
1-430, gnl|rn3|chr7 (98987229-98987969) |
| |
|
432-720, gnl|bosTau2|chr14 (6563959-6564248) |
|
432-720, gnl|Hg17|chr8 (128819672-128819963) |
|
432-720, gnl|Mm7|chr15 (62061798-62062092) |
|
ese (0.126502) |
|
eje (0.0988338) |
|
ese (0.126502) |
|
eje (0.0988338) |
