Ss1.1-Pig4-TMW8041I04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGGAGGCAGGCGCTCGCTGAGGCAAGGAGGAGGGCTCTGGGCCCGCGGCCTGACAGG GACTTAGCCCGCACAGATCGGCCCCGCGCGCGCGCGCGTGACCCCACACCCACCCACTCA TCCACCTACCCACTCCCTGCGCCGCCTCCTCCCACCCTGAGCAGAGCCGCCGAGGATGAT AAACACCCAGGACAGTAGTATCTTGCCTTTGAGTAACTGTCCCCAGCTCCAGTGCTGCAG GCACATTGTTCCGGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACTGTCGAAGATCC CCGGTGGGCGAGGGGGCGGCAGGGATCCTTCTGTCTCAGCTCTAATATATAAGGACGAGA AGCTCACTGTGACCCAGGACCTCCCTGTGAACGATGGAAAACCTCACATCGTCCACTTCC AGTATGAGGTCACCGAGGTGAAGGTCTCTTCCTGGGATGCAGTCCTGTCCAGCCAGAGCC TGTTTGTAGAAATCCCAGATGGATTATTAGCTGATGGGAGCAAAGAAGGATTGTTAGCAC TGCTAGAGTTTGCTGAAGAGAAGATGAAAGTGAACTATGTCTTCATCTGCTTCAGGAAGG GCCGGGAAGACAGAGCTCCACTCCTGAAGACCTTCAGCTTCTTGGGCTTTGAGATTGTGC GTCCAGGTCATCCCTGTGTTCCCTCTCGGCCAGATGTGATGTTCATGGTTTACCCCCTGG ACCAGAACTTGTCTGATGAGGACTAATGGTCATAGAGGATGCTTTGCCCAAGAGCCGCAG TGGGGGAAGAGGGGAAGTTAGGCAGCCCTGGGACAGAGGAGGGGGCTCCTTGCTGTCTAG GGAAGGACGCTGAGGGGCTCAGGGTGAGGGTTGCCTATTGTGTTCTCAGAGTTGACTCGT TGAAATTGTTTTCCATAAAGAACAGTATAAACATATTATTCACATGTAATCACCAATAGT AAATGAAGATGTTTATGAACTGGCATTAGAAGCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGGAGGCAGGCGCTCGCTGAGGCAAGGAGGAGGGCTCTGGGCCCGCGGCCTGACAGG GACTTAGCCCGCACAGATCGGCCCCGCGCGCGCGCGCGTGACCCCACACCCACCCACTCA TCCACCTACCCACTCCCTGCGCCGCCTCCTCCCACCCTGAGCAGAGCCGCCGAGGATGAT AAACACCCAGGACAGTAGTATCTTGCCTTTGAGTAACTGTCCCCAGCTCCAGTGCTGCAG GCACATTGTTCCGGGGCCTCTGTGGTGCTCCTGATGCCCCTCACCCACTGTCGAAGATCC CCGGTGGGCGAGGGGGCGGCAGGGATCCTTCTGTCTCAGCTCTAATATATAAGGACGAGA AGCTCACTGTGACCCAGGACCTCCCTGTGAACGATGGAAAACCTCACATCGTCCACTTCC AGTATGAGGTCACCGAGGTGAAGGTCTCTTCCTGGGATGCAGTCCTGTCCAGCCAGAGCC TGTTTGTAGAAATCCCAGATGGATTATTAGCTGATGGGAGCAAAGAAGGATTGTTAGCAC TGCTAGAGTTTGCTGAAGAGAAGATGAAAGTGAACTATGTCTTCATCTGCTTCAGGAAGG GCCGGGAAGACAGAGCTCCACTCCTGAAGACCTTCAGCTTCTTGGGCTTTGAGATTGTGC GTCCAGGTCATCCCTGTGTTCCCTCTCGGCCAGATGTGATGTTCATGGTTTACCCCCTGG ACCAGAACTTGTCTGATGAGGACTAATGGTCATAGAGGATGCTTTGCCCAAGAGCCGCAG TGGGGGAAGAGGGGAAGTTAGGCAGCCCTGGGACAGAGGAGGGGGCTCCTTGCTGTCTAG GGAAGGACGCTGAGGGGCTCAGGGTGAGGGTTGCCTATTGTGTTCTCAGAGTTGACTCGT TGAAATTGTTTTCCATAAAGAACAGTATAAACATATTATTCACATGTAATCACCAATAGT AAATGAAGATGTTTATGAACTGGCATTAGAAGCTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 352-470, - strand, RNAz p=0.920918 | |
| 416-529, + strand, RNAz p=0.931874 | |
| 693-892, + strand, RNAz p=0.994592 | |
| 777-930, - strand, RNAz p=0.910333 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 352-470, - strand, RNAz p=0.920918 | |
| 416-529, + strand, RNAz p=0.931874 | |
| 693-892, + strand, RNAz p=0.994592 | |
| 777-930, - strand, RNAz p=0.910333 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
| 275-327, RF00381;Antizyme_FSE; (AF242521.1/225-279), blast E-value=2e-22 |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 275-327, RF00381;Antizyme_FSE; (AF242521.1/225-279), blast E-value=2e-22 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002537, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 352-529, gnl|bosTau2|chr10 (30596571-30596394) | |
| 352-529, gnl|canFam2|chr30 (32119835-32120038) | |
| 352-529, gnl|danRer3|chr25 (4985309-4985119) | |
| 352-529, gnl|dasNov1|scaffold_3293 (103994-104198) | |
| 352-529, gnl|echTel1|scaffold_320164 (50489-50693) | |
| 352-529, gnl|fr1|chrUn (97731241-97731451) | |
| 352-529, gnl|galGal2|chr10 (1521467-1521664) | |
| 352-529, gnl|hg17|chr15 (62769620-62769824) | |
| 352-529, gnl|Hg17|chr15 (62769803-62769626) | |
| 352-529, gnl|loxAfr1|scaffold_38194 (9767-9971) | |
| 352-529, gnl|mm7|chr9 (65717622-65717417) | |
| 352-529, gnl|Mm7|chr9 (65717437-65717614) | |
| 352-529, gnl|monDom2|scaffold_12 (48745696-48745492) | |
| 352-529, gnl|oryCun1|scaffold_207286 (104051-104256) | |
| 352-529, gnl|panTro1|chr16 (63236389-63236593) | |
| 352-529, gnl|rheMac2|chr7 (43148542-43148746) | |
| 352-529, gnl|rn3|chr8 (69965572-69965367) | |
| 352-529, gnl|tetNig1|chr13 (7963229-7963413) | |
| 352-529, gnl|xenTro1|scaffold_295 (555862-556048) | |
| 614-996, gnl|bosTau2|chr10 (30595230-30594848) | |
| 614-996, gnl|canFam2|chr30 (32118264-32118541) | |
| 614-996, gnl|dasNov1|scaffold_154885 (4708-4430) | |
| 614-996, gnl|echTel1|scaffold_320164 (49132-49381) | |
| 614-996, gnl|galGal2|chr10 (1517896-1518164) | |
| 614-996, gnl|hg17|chr15 (62767671-62767948) | |
| 614-996, gnl|Hg17|chr15 (62768088-62767706) | |
| 614-996, gnl|mm7|chr9 (65719151-65718876) | |
| 614-996, gnl|Mm7|chr9 (65718734-65719116) | |
| 614-996, gnl|monDom2|scaffold_12 (48747357-48747079) | |
| 614-996, gnl|oryCun1|scaffold_207286 (102699-102973) | |
| 614-996, gnl|panTro1|chr16 (63234441-63234718) | |
| 614-996, gnl|rheMac2|chr7 (43146515-43146792) | |
| 614-996, gnl|rn3|chr8 (69967093-69966818) | |
| 614-996, gnl|xenTro1|scaffold_295 (549998-550342) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 352-529, gnl|bosTau2|chr10 (30596571-30596394) | |
| 352-529, gnl|canFam2|chr30 (32119835-32120038) | |
| 352-529, gnl|danRer3|chr25 (4985309-4985119) | |
| 352-529, gnl|dasNov1|scaffold_3293 (103994-104198) | |
| 352-529, gnl|echTel1|scaffold_320164 (50489-50693) | |
| 352-529, gnl|fr1|chrUn (97731241-97731451) | |
| 352-529, gnl|galGal2|chr10 (1521467-1521664) | |
| 352-529, gnl|hg17|chr15 (62769620-62769824) | |
| 352-529, gnl|Hg17|chr15 (62769803-62769626) | |
| 352-529, gnl|loxAfr1|scaffold_38194 (9767-9971) | |
| 352-529, gnl|mm7|chr9 (65717622-65717417) | |
| 352-529, gnl|Mm7|chr9 (65717437-65717614) | |
| 352-529, gnl|monDom2|scaffold_12 (48745696-48745492) | |
| 352-529, gnl|oryCun1|scaffold_207286 (104051-104256) | |
| 352-529, gnl|panTro1|chr16 (63236389-63236593) | |
| 352-529, gnl|rheMac2|chr7 (43148542-43148746) | |
| 352-529, gnl|rn3|chr8 (69965572-69965367) | |
| 352-529, gnl|tetNig1|chr13 (7963229-7963413) | |
| 352-529, gnl|xenTro1|scaffold_295 (555862-556048) | |
| 614-996, gnl|bosTau2|chr10 (30595230-30594848) | |
| 614-996, gnl|canFam2|chr30 (32118264-32118541) | |
| 614-996, gnl|dasNov1|scaffold_154885 (4708-4430) | |
| 614-996, gnl|echTel1|scaffold_320164 (49132-49381) | |
| 614-996, gnl|galGal2|chr10 (1517896-1518164) | |
| 614-996, gnl|hg17|chr15 (62767671-62767948) | |
| 614-996, gnl|Hg17|chr15 (62768088-62767706) | |
| 614-996, gnl|mm7|chr9 (65719151-65718876) | |
| 614-996, gnl|Mm7|chr9 (65718734-65719116) | |
| 614-996, gnl|monDom2|scaffold_12 (48747357-48747079) | |
| 614-996, gnl|oryCun1|scaffold_207286 (102699-102973) | |
| 614-996, gnl|panTro1|chr16 (63234441-63234718) | |
| 614-996, gnl|rheMac2|chr7 (43146515-43146792) | |
| 614-996, gnl|rn3|chr8 (69967093-69966818) | |
| 614-996, gnl|xenTro1|scaffold_295 (549998-550342) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nca (0.136874) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| nbm (0.0993246) |