Non-Coding RNA Search

Ss1.1-Pig3-SRG8024O17.3

Sequence:


               
               GTTTTAATTTTGGTGGGCCTCTGGGTGGAGGTTATCTCAAGACCCTCCTACTCTGCCATC
TTGGCCACACCCCTGTTCATTCTTTTAAGATTGAACTATCTTTTGAGTTAATTTATTCAA
GTTAATAATGAATTCTGTGGCAACTGCTGCTTTTTTGTACATGCTTATCTCTCTGATCCT
CACAACCACCCATTTTATAGACTAGTAACTGAAGTTCGTTGACACTTATCAGAAAATAAT
CAGTTGCTAGCTAGTAAGGGCATGGTTTATATTTGAATCCAAATCTTTTCTCTCAATCTA
GAGCTTTTTAATTCAATACTATAGTGATATTACCAAGTCTTATTCATGTTTTCTCACTAT
CTTTCTCACATCCATTTTGTACACTAAACAGGTATTTATCCATTACTTGTGTTCTAGATG
CTTAGGCCATATAACTGAACAAATTGGACAAAGATTTCTGCCCTCGTGGAGCTTACATTC
TAATGAGTGAAATGAGTGATTAACTAAACATAATAAATAAGTCATTAAGTCTCTTAGAAG
GTGATAATTGCTGTGGAAAAAGAAAAAGTGGAGAAGAATAAGAGATAGGGTTCAGATTTT
AATTAGGATGTTACTGGAAAACATGGCATTTGAGCAAATACTTGAAGGAGGTTACAGTTT
AGCTATATGGCTGTCTAGTCAAATGAGTGTTCCAGACAGAAGAATAGTGTGTGCAAACAC
TTTAAGGGGAGGCACACGTGTGTCATATTAGGAGAGTAACAAGAAGACTAGTGTAGCTGG
AATCAATTTATAACCTCCTACCTCCAACCACTGGTTAAAGTCTGTGCCTTTTAGGGAGTT
CGCTGATGGTCTGGTGGTTAGGACTTGGTGCTTTCACTGCTGTGGCCTTGGTTCAATCCC
TGGTCTGGGATCTGAGATCACACATCAAGCTGCTGCAAACTGTGGCCAAAAAAGGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTAATTTTGGTGGGCCTCTGGGTGGAGGTTATCTCAAGACCCTCCTACTCTGCCATC
TTGGCCACACCCCTGTTCATTCTTTTAAGATTGAACTATCTTTTGAGTTAATTTATTCAA
GTTAATAATGAATTCTGTGGCAACTGCTGCTTTTTTGTACATGCTTATCTCTCTGATCCT
CACAACCACCCATTTTATAGACTAGTAACTGAAGTTCGTTGACACTTATCAGAAAATAAT
CAGTTGCTAGCTAGTAAGGGCATGGTTTATATTTGAATCCAAATCTTTTCTCTCAATCTA
GAGCTTTTTAATTCAATACTATAGTGATATTACCAAGTCTTATTCATGTTTTCTCACTAT
CTTTCTCACATCCATTTTGTACACTAAACAGGTATTTATCCATTACTTGTGTTCTAGATG
CTTAGGCCATATAACTGAACAAATTGGACAAAGATTTCTGCCCTCGTGGAGCTTACATTC
TAATGAGTGAAATGAGTGATTAACTAAACATAATAAATAAGTCATTAAGTCTCTTAGAAG
GTGATAATTGCTGTGGAAAAAGAAAAAGTGGAGAAGAATAAGAGATAGGGTTCAGATTTT
AATTAGGATGTTACTGGAAAACATGGCATTTGAGCAAATACTTGAAGGAGGTTACAGTTT
AGCTATATGGCTGTCTAGTCAAATGAGTGTTCCAGACAGAAGAATAGTGTGTGCAAACAC
TTTAAGGGGAGGCACACGTGTGTCATATTAGGAGAGTAACAAGAAGACTAGTGTAGCTGG
AATCAATTTATAACCTCCTACCTCCAACCACTGGTTAAAGTCTGTGCCTTTTAGGGAGTT
CGCTGATGGTCTGGTGGTTAGGACTTGGTGCTTTCACTGCTGTGGCCTTGGTTCAATCCC
TGGTCTGGGATCTGAGATCACACATCAAGCTGCTGCAAACTGTGGCCAAAAAAGGAAAAA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               840-911, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=27.41

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               840-911, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=27.41