Non-Coding RNA Search

Ss1.1-4civ-UMC-p4civv1-017-g05.3

Sequence:


               
               CGGGGTGGAGCAGTTTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAATC
CTGCCCCCGCAACCAGCCAGAAAAAGCGAAAATAAAAGGAAAAGGAAAGAGGCGAGCAAA
AAGGAAAAAAGGAATAGAAGGGAAAGAGTAAAAGAGAAAGAAAAAAAAGAAAAGAAAAGG
AAAAAAAAAGAGGGAGAAAAAAAAAGCAGAGAAATAAGCAAAAGTAAGAATAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGTGGAGCAGTTTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGCAGGTTCAAATC
CTGCCCCCGCAACCAGCCAGAAAAAGCGAAAATAAAAGGAAAAGGAAAGAGGCGAGCAAA
AAGGAAAAAAGGAATAGAAGGGAAAGAGTAAAAGAGAAAGAAAAAAAAGAAAAGAAAAGG
AAAAAAAAAGAGGGAGAAAAAAAAAGCAGAGAAATAAGCAAAAGTAAGAATAATAAAAAA

ncRNA annotation: 2 entry(ies)

Help | Less info


               
               1-70, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=7e-31
               

               
               1-71, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=56.31

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1-70, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=7e-31
               

               
               1-71, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=56.31

	1-70, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=7e-31
	1-71, RF00005;tRNA; (AE012553.1/241438-241511), RaveNnA Score=56.31