Non-Coding RNA Search

Ss1.1-Mus1-POSM0100007_F06.3

Sequence:


               
               TTCCGGGATCAGGGATCGAACCTGTACCATAGCAGTGACAATGCCGGACCTTAACCCACT
GAGCCACCAGGGAACTCCGTGTGACTACTTCTTGATATACGTTTCAGGCCAGAGGAGTCT
CTGTCCGCACGTTGCACACATATCCGTATCCTCCGAGGCTAAGCCCGCAGGGTGTGGGCC
TGCAGGGTGTGGGCCGAGCTGCTGCCTCTCCCATCATGCACCTGTGCAGGCCGGGGTTTT
CCTGTCCCGGAGCCGTGAAGAAACAGCCAGGTGACATCGTGGATCTTCCTCGTTTGACTT
GAAGTTGACCGCTTCATTCCAGGGAATGGTCAGCGTGTCACGTGTTACGACCCGTTTTAA
AAGCCTGAAAAAATGACGTTTCTTGTTCACTTTGGGGCCTCGGGTTGGTTTATTGTGATT
GGATCAGAGAACCTAATGAATATAGGTTCGCTGCAGAACATAAGCACAATTTTATGTTTT
CTGATGCCCACATCTTGGTGCGCTAAATGCTGCATAGGAATCTTGCCATTCAAGCTGGAC
GGCATGGGAGGGTTGAGTCATAAACTCATGCAGTTCATCAAATCTAAGCCATTGAGTCTT
GTGACGTGAGTCATTGTGTTTCTAAGAAGTGCCTTTTCATTTCTGTGGTTGTTTACATAC
AGTGTTGTATTTAAACCAATTAAAATAATCCAATTAAATAAATGGTAGCAAAAAAAAAAC
AACCCTCAAGCTTAGAGAATGTAAAAAGAATTGCGTCAGGTGGAAAATGTGTAAAAGCAT
AAACAATGAACTATAAAAATATCAGTATTAGCTATAGTTGTTTAGGTTTAGACTCTCTCT
CAAATCCTTAGTGACTAAATAGGCTGAAGGTTTGTAACTCACTTGGCTAGGGTGGCATTG
GTGGCCTTGGTGGACGGGGAGACCGGAGACCGTTTGCAGATTTCTAGCGGTTGTTAGGCC
TACTTGGTTAGTTTCCAGAAAAAAAGAATTTCTACCTTCAAGGCTTAAATATTGCCTATT
TCCTCTTTCCGTTATGCTCATTTATGTGAATAGTTAAATAAAAATGTAAAACTCTTGGTA
GTACTGCATTTCAGAGTGACAGAGAAGCAGTTTTGATCATTTATTGATATACATGTACAG
AGCACTATTCAAAATGGCCTGAAAATATTCAGCAGGTTTGTTATTTGCTGTGTGATTATC
ATAGGCTCGGTTTTGTTTATAATAAAATGATACACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGGGATCAGGGATCGAACCTGTACCATAGCAGTGACAATGCCGGACCTTAACCCACT
GAGCCACCAGGGAACTCCGTGTGACTACTTCTTGATATACGTTTCAGGCCAGAGGAGTCT
CTGTCCGCACGTTGCACACATATCCGTATCCTCCGAGGCTAAGCCCGCAGGGTGTGGGCC
TGCAGGGTGTGGGCCGAGCTGCTGCCTCTCCCATCATGCACCTGTGCAGGCCGGGGTTTT
CCTGTCCCGGAGCCGTGAAGAAACAGCCAGGTGACATCGTGGATCTTCCTCGTTTGACTT
GAAGTTGACCGCTTCATTCCAGGGAATGGTCAGCGTGTCACGTGTTACGACCCGTTTTAA
AAGCCTGAAAAAATGACGTTTCTTGTTCACTTTGGGGCCTCGGGTTGGTTTATTGTGATT
GGATCAGAGAACCTAATGAATATAGGTTCGCTGCAGAACATAAGCACAATTTTATGTTTT
CTGATGCCCACATCTTGGTGCGCTAAATGCTGCATAGGAATCTTGCCATTCAAGCTGGAC
GGCATGGGAGGGTTGAGTCATAAACTCATGCAGTTCATCAAATCTAAGCCATTGAGTCTT
GTGACGTGAGTCATTGTGTTTCTAAGAAGTGCCTTTTCATTTCTGTGGTTGTTTACATAC
AGTGTTGTATTTAAACCAATTAAAATAATCCAATTAAATAAATGGTAGCAAAAAAAAAAC
AACCCTCAAGCTTAGAGAATGTAAAAAGAATTGCGTCAGGTGGAAAATGTGTAAAAGCAT
AAACAATGAACTATAAAAATATCAGTATTAGCTATAGTTGTTTAGGTTTAGACTCTCTCT
CAAATCCTTAGTGACTAAATAGGCTGAAGGTTTGTAACTCACTTGGCTAGGGTGGCATTG
GTGGCCTTGGTGGACGGGGAGACCGGAGACCGTTTGCAGATTTCTAGCGGTTGTTAGGCC
TACTTGGTTAGTTTCCAGAAAAAAAGAATTTCTACCTTCAAGGCTTAAATATTGCCTATT
TCCTCTTTCCGTTATGCTCATTTATGTGAATAGTTAAATAAAAATGTAAAACTCTTGGTA
GTACTGCATTTCAGAGTGACAGAGAAGCAGTTTTGATCATTTATTGATATACATGTACAG
AGCACTATTCAAAATGGCCTGAAAATATTCAGCAGGTTTGTTATTTGCTGTGTGATTATC
ATAGGCTCGGTTTTGTTTATAATAAAATGATACACT

ncRNA annotation: 1 entry(ies)

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               73-1, tRNA Pseudo, RaveNnA Score=27.2

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               73-1, tRNA Pseudo, RaveNnA Score=27.2

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               hea (0.204499)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	cmu (0.372787)
	sme (0.305437)
	cte (0.29274)
	hea (0.204499)
	gul (0.177588)
	lin (0.145603)
	csk (0.140746)
	sug (0.127291)
	ese (0.126502)