Non-Coding RNA Search

Ss1.1-Thy1-THY010084F12.5

Sequence:


               
               AAACCAGTGAGATATTATGGCGCGTACTAAACAGACCGCCCGCAAATCGACCGGGGGCAA
GGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACCGGCGG
CGTGAAGAAGCCCCACCGCTACCGGCCGGGCACCGTGGCCCTGCGGGAGATCCGGCGCTA
CCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGCGAGAT
CGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGA
GGCGAGCGAGGCCTACCTGGTGGGGCTGTTTGAAGACACGAACCTGTGTGCCATCCACGC
CAAGCGCGTGACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGCGGGGAGCG
GGCTTAAGGCATTTTTTTTTTACGTAGACTATCTTAAAGGCTCTTTTCAGAGCCACTCAC
CTTTTCAAAAGGAGCAGTTGTACCACCTCTCAGCCATGTCAGTGGGCTCGTTATGCACAG
GTGTTAAGGGTAAAGGGGATCAAGTAATCTTGTATGTGTTGGTGAGGTTACAGAATTAAA
GCCGACAGACGCCAGAGGGAGCATCAGGCAAAATCTAGGTCGTCATGGCCAAGTGCTGAC
GTGATTTCTGAAGTCCAGAGGGCTAAGCTTGCTACTTACGTGGGAAAACTGCAAGAGGAT
AGTCTGCTCTACGCAGTTTTTGCTTTATTTTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCAGTGAGATATTATGGCGCGTACTAAACAGACCGCCCGCAAATCGACCGGGGGCAA
GGCCCCGCGGAAGCAGCTGGCCACCAAGGCGGCCCGCAAGAGCGCGCCGGCCACCGGCGG
CGTGAAGAAGCCCCACCGCTACCGGCCGGGCACCGTGGCCCTGCGGGAGATCCGGCGCTA
CCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGCGCGAGAT
CGCGCAGGACTTCAAGACGGACCTGCGCTTCCAGAGCTCGGCCGTGATGGCGCTGCAGGA
GGCGAGCGAGGCCTACCTGGTGGGGCTGTTTGAAGACACGAACCTGTGTGCCATCCACGC
CAAGCGCGTGACCATCATGCCCAAAGACATCCAGCTGGCCCGCCGCATCCGCGGGGAGCG
GGCTTAAGGCATTTTTTTTTTACGTAGACTATCTTAAAGGCTCTTTTCAGAGCCACTCAC
CTTTTCAAAAGGAGCAGTTGTACCACCTCTCAGCCATGTCAGTGGGCTCGTTATGCACAG
GTGTTAAGGGTAAAGGGGATCAAGTAATCTTGTATGTGTTGGTGAGGTTACAGAATTAAA
GCCGACAGACGCCAGAGGGAGCATCAGGCAAAATCTAGGTCGTCATGGCCAAGTGCTGAC
GTGATTTCTGAAGTCCAGAGGGCTAAGCTTGCTACTTACGTGGGAAAACTGCAAGAGGAT
AGTCTGCTCTACGCAGTTTTTGCTTTATTTTTTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q78E59_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q78E59_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               131-479, - strand, RNAz p=0.627471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-479, - strand, RNAz p=0.627471

ncRNA annotation: 1 entry(ies)

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               454-479, , RaveNnA Score=30.88

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               454-479, , RaveNnA Score=30.88

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-643, gnl|bosTau2|chr3 (17643892-17644538)
               

               
               1-643, gnl|Hg17|chr1 (146598325-146597686)
               


               
               12-428, gnl|bosTau2|chr11 (1692764-1692348)
               

               
               12-428, gnl|Hg17|chr2 (175410138-175410554)
               

               
               12-428, gnl|Mm7|chr16 (91164505-91164089)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-643, gnl|bosTau2|chr3 (17643892-17644538)
               

               
               1-643, gnl|Hg17|chr1 (146598325-146597686)
               


               
               12-428, gnl|bosTau2|chr11 (1692764-1692348)
               

               
               12-428, gnl|Hg17|chr2 (175410138-175410554)
               

               
               12-428, gnl|Mm7|chr16 (91164505-91164089)

	1-643, gnl\|bosTau2\|chr3 (17643892-17644538)
	1-643, gnl\|Hg17\|chr1 (146598325-146597686)

	12-428, gnl\|bosTau2\|chr11 (1692764-1692348)
	12-428, gnl\|Hg17\|chr2 (175410138-175410554)
	12-428, gnl\|Mm7\|chr16 (91164505-91164089)