Ss1.1-Pig4-TMW8019D10.3
|
TAAATGCATTTCTGAGATACTTGGAACTCAGTCTCAACTAGTTGGAAAAATGTAGTACCT
TGTAACCATTAAAATCTTACTTTCCATAGGTGGGGGAATTTTGAAGTGAGTCCATTATTT
CATTGATACTTGCAAAGCTGAACTAAACAACTGTGGCAAGTAATTTTATTTTTCCACTCC
CATTTTATTTGTCAGGGTATATGGTCATTACCAAGGCTCTTAGAATGCAGTTTCTCATTA
GCTGTGGACATGACCATAAAAAAATTTCCCGCTAGGTCTTATTTCTGCTACTTTGTTTAG
CATTCAGCCTACTGGGAACATTTTATTAGCACTACTTGTATGTTTATTGTTTAGGTCAAT
TCTGTTCCAATATATAACATATAACATGAGCCATGTGATTTTTCTAATTAGATTTTTATA
ATACCCATACATGGCTTGGGGCTGTTATGGACATTACAGGTTCTCCAGGGAGTGGCTTTA
GAAGAGCATCCCTGAAAATGAAACCTTACTAATATATTTCTGTTATACAGGACTGATATG
ACGAATGGTTCATGTATGCACCGAGCAAAAATTCTTTTTAAAGGGGCTCCCTTGAAGATA
ATGACTGAAACATTGAAAGGACCCCAAACATTGGAGAAAGCAGTGGAAAGAATCCTTAAA
AGTTTATTGACTTAAATAATTTTGTCTGTGCTACACATAAAAAAAAACCTTTACACTTTG
TACAGTCAGCATGTATTTTTGGCTCGAAGTTTCTCTAGTGTTTTCTGTGGAAGGAAATAA
TAAATTTATCAGGCTCCCTTGAAGATAATGACTGAAACATTGAAAGGACCCCAAACATTG
GAGAAAGCAGTGGAAAGAATCCTTAAAAGTTTATTGACTTAAATAATTTTGTCTGTGCTA
CACATAAAAAAAAACCTTTACACTTTGTACAGTCAGCATGTATTTTTGGCTCGAAGTTTC
TCTAGTGTTTTCTGTGGAAGGAAATAATAAATTTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TAAATGCATTTCTGAGATACTTGGAACTCAGTCTCAACTAGTTGGAAAAATGTAGTACCT
TGTAACCATTAAAATCTTACTTTCCATAGGTGGGGGAATTTTGAAGTGAGTCCATTATTT
CATTGATACTTGCAAAGCTGAACTAAACAACTGTGGCAAGTAATTTTATTTTTCCACTCC
CATTTTATTTGTCAGGGTATATGGTCATTACCAAGGCTCTTAGAATGCAGTTTCTCATTA
GCTGTGGACATGACCATAAAAAAATTTCCCGCTAGGTCTTATTTCTGCTACTTTGTTTAG
CATTCAGCCTACTGGGAACATTTTATTAGCACTACTTGTATGTTTATTGTTTAGGTCAAT
TCTGTTCCAATATATAACATATAACATGAGCCATGTGATTTTTCTAATTAGATTTTTATA
ATACCCATACATGGCTTGGGGCTGTTATGGACATTACAGGTTCTCCAGGGAGTGGCTTTA
GAAGAGCATCCCTGAAAATGAAACCTTACTAATATATTTCTGTTATACAGGACTGATATG
ACGAATGGTTCATGTATGCACCGAGCAAAAATTCTTTTTAAAGGGGCTCCCTTGAAGATA
ATGACTGAAACATTGAAAGGACCCCAAACATTGGAGAAAGCAGTGGAAAGAATCCTTAAA
AGTTTATTGACTTAAATAATTTTGTCTGTGCTACACATAAAAAAAAACCTTTACACTTTG
TACAGTCAGCATGTATTTTTGGCTCGAAGTTTCTCTAGTGTTTTCTGTGGAAGGAAATAA
TAAATTTATCAGGCTCCCTTGAAGATAATGACTGAAACATTGAAAGGACCCCAAACATTG
GAGAAAGCAGTGGAAAGAATCCTTAAAAGTTTATTGACTTAAATAATTTTGTCTGTGCTA
CACATAAAAAAAAACCTTTACACTTTGTACAGTCAGCATGTATTTTTGGCTCGAAGTTTC
TCTAGTGTTTTCTGTGGAAGGAAATAATAAATTTAT
|
|
202-323, RF00421;snoACA32; (AJ609442.1/1-121) : ACA32 (gnl|combinedlit|LIT2254),
RaveNnA Score=100.23 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
202-323, RF00421;snoACA32; (AJ609442.1/1-121) : ACA32 (gnl|combinedlit|LIT2254),
RaveNnA Score=100.23 |
|
sag (0.548145) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
thg (0.253582) |
|
tra (0.246184) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
gul (0.177588) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
mga (0.160205) |
|
ski (0.146735) |
|
liv (0.146284) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
spc (0.113366) |
|
sag (0.548145) |
|
ldo (0.291008) |
|
fce (0.271592) |
|
thg (0.253582) |
|
tra (0.246184) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
gul (0.177588) |
|
duo (0.172801) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
mga (0.160205) |
|
ski (0.146735) |
|
liv (0.146284) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
spc (0.113366) |
