Non-Coding RNA Search

Ss1.1-recc2803c_k24.5

Sequence:


               
               TGAAAAATGGAGATAACCATCTATCTCGCAGCATTGTAAGATTCCAAGGGCATAAGTATC
CAAAATTTGGCAATAGTGTTGAACTATGAATTCTGGCCTTCAATGTCTAAAAAAGATCAT
GGGTTCCCTGGTTGACCTAGCAGGTTAGGGATCCAGCATTGTCACTGCTGTGGCATGGGT
TCAATCCCTGGCCTGGGAACTTCTGCTTGCTATGGGCACAGCCAAATAAATAAATAAGTC
GGGAATTCTGACTACAATAATTTTCCCCTTAAATATTTTAATGGGATGTGTCATCCAGGA
AATACCCGAAGATACAAGAGAAACTAATGTAGCAGGGAACATTGGCTAGCCTATGGGGAT
ACAAGAGATTTGCTGGTGTTCTCAGTAGCTGTAGCTGCCACGGAAGACTGGTTAAAAGAT
ACTCTCGGAGTTCCCGTCGTGGCACAGTGGTTAACGAATCCGACTAGGAACCATGAGGTT
GCGGGTTCGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAAATGGAGATAACCATCTATCTCGCAGCATTGTAAGATTCCAAGGGCATAAGTATC
CAAAATTTGGCAATAGTGTTGAACTATGAATTCTGGCCTTCAATGTCTAAAAAAGATCAT
GGGTTCCCTGGTTGACCTAGCAGGTTAGGGATCCAGCATTGTCACTGCTGTGGCATGGGT
TCAATCCCTGGCCTGGGAACTTCTGCTTGCTATGGGCACAGCCAAATAAATAAATAAGTC
GGGAATTCTGACTACAATAATTTTCCCCTTAAATATTTTAATGGGATGTGTCATCCAGGA
AATACCCGAAGATACAAGAGAAACTAATGTAGCAGGGAACATTGGCTAGCCTATGGGGAT
ACAAGAGATTTGCTGGTGTTCTCAGTAGCTGTAGCTGCCACGGAAGACTGGTTAAAAGAT
ACTCTCGGAGTTCCCGTCGTGGCACAGTGGTTAACGAATCCGACTAGGAACCATGAGGTT
GCGGGTTCGATC

ncRNA annotation: 1 entry(ies)

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               125-199, tRNA Asp, RaveNnA Score=25.12

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               125-199, tRNA Asp, RaveNnA Score=25.12

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               ecc (0.115035)