Non-Coding RNA Search

LyN1-MLN01F120023

Sequence:


               
               CTATTAAACTGTATTTCATTTGTTTGTTTTATAAAAACAGCCAAAAGTATGTTTTGCTTC
AAGCACCAGGGTTTAAGTAAAATTTTCTTATATAATTTCCATTAGTGTTTAGTTTTTTGT
TTAATGTCAAATGGTGATAGAATGGATATTGCAAAGAAAATTATTTTCTGGTATTTTCAG
CAGTGAAACACATGAAACACGTggagttccctggtggcctagtgatgaagaacttagcat
tgtcactgctgtggctcaggttcgacccctggcctaggaacttccACCTGCTACAAGTGC
CACCAAAACAAACAAACCCAGTCAGTACTTCATGTACATATGGGTCATAGAATTCTGTGG
ACCAGTTTCAAAAAACATACCTATATAAAATTAATTTTCTGTTTTTTGTTTTGGTCTTGC
TCATGGCATGTGGAAGTTCTCAGCTGCACCACAGCTATGAAAACACTGGAGCCTTAAGCC
TTTGCACCCTAAGAGAACTCCTATAACATTAAATTTTAGGGCAAGTTGCATGAGTTGGGA
GCTACCTGAGATGTCAGCCTGCAAAGGGCTTTTACTTTGTACCATATTGAAATGTGGTGC
AGAGTCATTTAGTTAATTGAGCCAACAATAAAATAAAAGAAAGCAAGCCTTTTTCTAATT
AGCCAGGAAAGGCTTAGTTTTCATCTGAAATCACCTTGTTGTCTTTTAGTTAGTGATGgt
tcctgtcgtggctcagtggttaacaatccgactaggaaccatgaggtttcaggttcgtat
ccgtggcctcgctcagtgggttaaggacccggcgttgccgagagctgtggtgtagcttgc
agacacagcttggatcttgcgtggctgtggctgtggt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTAAACTGTATTTCATTTGTTTGTTTTATAAAAACAGCCAAAAGTATGTTTTGCTTC
AAGCACCAGGGTTTAAGTAAAATTTTCTTATATAATTTCCATTAGTGTTTAGTTTTTTGT
TTAATGTCAAATGGTGATAGAATGGATATTGCAAAGAAAATTATTTTCTGGTATTTTCAG
CAGTGAAACACATGAAACACGTggagttccctggtggcctagtgatgaagaacttagcat
tgtcactgctgtggctcaggttcgacccctggcctaggaacttccACCTGCTACAAGTGC
CACCAAAACAAACAAACCCAGTCAGTACTTCATGTACATATGGGTCATAGAATTCTGTGG
ACCAGTTTCAAAAAACATACCTATATAAAATTAATTTTCTGTTTTTTGTTTTGGTCTTGC
TCATGGCATGTGGAAGTTCTCAGCTGCACCACAGCTATGAAAACACTGGAGCCTTAAGCC
TTTGCACCCTAAGAGAACTCCTATAACATTAAATTTTAGGGCAAGTTGCATGAGTTGGGA
GCTACCTGAGATGTCAGCCTGCAAAGGGCTTTTACTTTGTACCATATTGAAATGTGGTGC
AGAGTCATTTAGTTAATTGAGCCAACAATAAAATAAAAGAAAGCAAGCCTTTTTCTAATT
AGCCAGGAAAGGCTTAGTTTTCATCTGAAATCACCTTGTTGTCTTTTAGTTAGTGATGgt
tcctgtcgtggctcagtggttaacaatccgactaggaaccatgaggtttcaggttcgtat
ccgtggcctcgctcagtgggttaaggacccggcgttgccgagagctgtggtgtagcttgc
agacacagcttggatcttgcgtggctgtggctgtggt

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               208-280, tRNA Pseudo, RaveNnA Score=29.69

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               208-280, tRNA Pseudo, RaveNnA Score=29.69