Non-Coding RNA Search

Pig1-60O13

Sequence:


               
               gccacagccactcaggattcaagccccatctgcgacctacaccatagctcatggcaatgc
tagatccttaatccattgagcaaggccaggaatcgaacctgcaacctcatgggtcctagt
cagattcatttccactgggccaggatgggaacCCCTTACTTCATTTTCTTTACCCACTGA
GAGGGAAGACAGCAAAAATATCCTTGAAATCAATGGAGTTATTTAGGGAAGCCCATAGAA
GAGAAAGAATTTTATTTTTTTATTTATTGGTATTTTTAATAACAAAAGCAAATCATGCTT
ATTATTTTAAAATGTAAATAATATAGAGGAGTATGTAAAGCAAACGTGCAAGTAACTTCT
CTCAGTTTCCTCATGCAATTCCCCAGGGATAGTTAACAACTACTGGCAAAATTTTGGTCT
TGAGAGTTCCCTGATGGTCCAGGGGTTATAATTCAGTGCATTCACCACTGCAGCCCAGGT
TCAATCCCTGGTCTGGGAACTGAGATCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               gccacagccactcaggattcaagccccatctgcgacctacaccatagctcatggcaatgc
tagatccttaatccattgagcaaggccaggaatcgaacctgcaacctcatgggtcctagt
cagattcatttccactgggccaggatgggaacCCCTTACTTCATTTTCTTTACCCACTGA
GAGGGAAGACAGCAAAAATATCCTTGAAATCAATGGAGTTATTTAGGGAAGCCCATAGAA
GAGAAAGAATTTTATTTTTTTATTTATTGGTATTTTTAATAACAAAAGCAAATCATGCTT
ATTATTTTAAAATGTAAATAATATAGAGGAGTATGTAAAGCAAACGTGCAAGTAACTTCT
CTCAGTTTCCTCATGCAATTCCCCAGGGATAGTTAACAACTACTGGCAAAATTTTGGTCT
TGAGAGTTCCCTGATGGTCCAGGGGTTATAATTCAGTGCATTCACCACTGCAGCCCAGGT
TCAATCCCTGGTCTGGGAACTGAGATCCCA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               428-499, tRNA Glu : RF00005;tRNA; (BX296548.20/172060-172131), RaveNnA 
Score=28.77

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               428-499, tRNA Glu : RF00005;tRNA; (BX296548.20/172060-172131), RaveNnA 
Score=28.77