Non-Coding RNA Search

Ss1.1-Pig4-TMW8055P08.3

Sequence:


               
               GAGAGAGGTTCCTCATTCTCTTCTTGGACATTATCCTGTCCGTGCAGGGGGCCCAGGACT
GCTGCAGACCCCCTTGCTACCAGGTTGAAGATGAAACTGCGCTGAAGGGTGCCACCCCTG
GGCAGAGAGAGGACCAGAGCCTAGGACCCTGGTGTGGTGCCTTCATCCCGTGCCACAGGG
GTCTGCTCCCAGAAGAGCTGGGGCCTGGCTATGATCGATGAGCTCCTGTCACCCTCATGA
CATACTCTCCTGAACCATCTCACCATCACTCAGAAGCTTTGCTTTGGAGGAAGGAAGAAA
GAACAGTCTATGTATTGTGTCTTGAGTGCTCCTTCGGGTGCTTTCCTATCTTCGTTCCCA
AACTACAAGAAAAAGCAAGATGGCATAGAGAGTGCAGGCTCCGAAGCCAGATTTCCGCAC
TTTGAGTCCTGCTCTACTGCCAACCAGCCGCGTGACTTTGAGTGACTTATGGTACAGTGG
CTTGATGTGGGATGTCAGTTCCCAGGCCAGGAATTGAACCTATGTCACACCAGTGAAAGT
GCTGAATCCTAACCCCTATACCACCAGGGAACTCCAAGGAAGATATCCAGACTCAGTCTA
TGAATAAGTAAATTTCCCAAAAGCTACAAGCTCTAGGATGTGCTCAACCAAAAGGCAGGA
TAGCTTTGAAGCAAGTGTGTAAGAGCATGGTGTCTGCAACTTGGGGTATAATCTCCGCTC
AGTCTGCCAGCTGTGTGACCTTGGGAAAATTACCTAACCTTTCTGGGCCTTGGTTGTCCC
ATCTGCAGGAAGAAGATACTAACAGTAACAGGGTTGTCACAGGATTAAATAAGGGAATAC
ATAGCAAGCTCTCAGGACGGCGGCTTGACCATTGTAAACATTCAATAAATACGGGTATGA
TTTCAGAGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGGTTCCTCATTCTCTTCTTGGACATTATCCTGTCCGTGCAGGGGGCCCAGGACT
GCTGCAGACCCCCTTGCTACCAGGTTGAAGATGAAACTGCGCTGAAGGGTGCCACCCCTG
GGCAGAGAGAGGACCAGAGCCTAGGACCCTGGTGTGGTGCCTTCATCCCGTGCCACAGGG
GTCTGCTCCCAGAAGAGCTGGGGCCTGGCTATGATCGATGAGCTCCTGTCACCCTCATGA
CATACTCTCCTGAACCATCTCACCATCACTCAGAAGCTTTGCTTTGGAGGAAGGAAGAAA
GAACAGTCTATGTATTGTGTCTTGAGTGCTCCTTCGGGTGCTTTCCTATCTTCGTTCCCA
AACTACAAGAAAAAGCAAGATGGCATAGAGAGTGCAGGCTCCGAAGCCAGATTTCCGCAC
TTTGAGTCCTGCTCTACTGCCAACCAGCCGCGTGACTTTGAGTGACTTATGGTACAGTGG
CTTGATGTGGGATGTCAGTTCCCAGGCCAGGAATTGAACCTATGTCACACCAGTGAAAGT
GCTGAATCCTAACCCCTATACCACCAGGGAACTCCAAGGAAGATATCCAGACTCAGTCTA
TGAATAAGTAAATTTCCCAAAAGCTACAAGCTCTAGGATGTGCTCAACCAAAAGGCAGGA
TAGCTTTGAAGCAAGTGTGTAAGAGCATGGTGTCTGCAACTTGGGGTATAATCTCCGCTC
AGTCTGCCAGCTGTGTGACCTTGGGAAAATTACCTAACCTTTCTGGGCCTTGGTTGTCCC
ATCTGCAGGAAGAAGATACTAACAGTAACAGGGTTGTCACAGGATTAAATAAGGGAATAC
ATAGCAAGCTCTCAGGACGGCGGCTTGACCATTGTAAACATTCAATAAATACGGGTATGA
TTTCAGAGCCAA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               570-499, tRNA Pseudo, RaveNnA Score=32.5

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               570-499, tRNA Pseudo, RaveNnA Score=32.5