Non-Coding RNA Search

Thy1-THY010058F10

Sequence:


               
               Gctctggtttctcttcatatcgtataaatctttcgccttttactaaagatttccgtggag
aggaacagttctgagtctCTGGATAGTTTATGGAATATACATATTGTGGTCACGACTGGG
TATAAGACACACAGAGCACCTTTGCCACAGAAACCTCTTTGGCACTTTGGGAATTTGAAG
TAGCACGGAGAGTACTTGTTTATCATTATATTTAGTAATTGCTATTTAACAATGACATTA
GTAACAAGGACTATTTATTGTGTGTTTTCCATGTGTCAACTCTGTACTTAGGTGTACATG
ATCACTAAGGGTTTTATACATCGAAGCGCACTTGATATTCTCAACAACTCCGTGTTGTCG
ATATTTTCACATCCCATTTTACAGAGAGAGAAACCAAGGCTTAGGGAGGTTAAGAAACTA
TTCTAAGGTCGTTGTCACACAGGGAGTCAGTTGGTCAGTCCAGATCCAATTGCAGACCTA
GCCCGTGTTCTTAACAATTTGGCCTCAGTGACTTCTTTTTGTAGATATTTCCTTGGGAAA
TTTGCTTTACCCAGTCAGTCTCTTAGCTTTTATTTAATAACCAAAAGCCTGACACATGCG
TGTTTTTCCTAGTCCTGGTTCTTCTACAGGGGGAGGTCAAAATCAAATTTAAAACATGTC
CTAAGAGGTCTTGGCACTGGACTAAGTAACAAGGCATCACAAATGCTTCATTTACATCCT
CCGTGTCTGAGGAGCTAAAGTCTGAGACCTCAGGAGCTCCCAAGGGGACTTTGCTCAAAG
GTCTAGTGACAAAGAGGTATCCATGACAACCACGTATGAGTGACCCAATGTGAGTCTTCA
GATAGAGTCCAGGAGAATATTTGATGTCCCTGCCACTATGCTTGGACTTTCACTATTTGG
C

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               Gctctggtttctcttcatatcgtataaatctttcgccttttactaaagatttccgtggag
aggaacagttctgagtctCTGGATAGTTTATGGAATATACATATTGTGGTCACGACTGGG
TATAAGACACACAGAGCACCTTTGCCACAGAAACCTCTTTGGCACTTTGGGAATTTGAAG
TAGCACGGAGAGTACTTGTTTATCATTATATTTAGTAATTGCTATTTAACAATGACATTA
GTAACAAGGACTATTTATTGTGTGTTTTCCATGTGTCAACTCTGTACTTAGGTGTACATG
ATCACTAAGGGTTTTATACATCGAAGCGCACTTGATATTCTCAACAACTCCGTGTTGTCG
ATATTTTCACATCCCATTTTACAGAGAGAGAAACCAAGGCTTAGGGAGGTTAAGAAACTA
TTCTAAGGTCGTTGTCACACAGGGAGTCAGTTGGTCAGTCCAGATCCAATTGCAGACCTA
GCCCGTGTTCTTAACAATTTGGCCTCAGTGACTTCTTTTTGTAGATATTTCCTTGGGAAA
TTTGCTTTACCCAGTCAGTCTCTTAGCTTTTATTTAATAACCAAAAGCCTGACACATGCG
TGTTTTTCCTAGTCCTGGTTCTTCTACAGGGGGAGGTCAAAATCAAATTTAAAACATGTC
CTAAGAGGTCTTGGCACTGGACTAAGTAACAAGGCATCACAAATGCTTCATTTACATCCT
CCGTGTCTGAGGAGCTAAAGTCTGAGACCTCAGGAGCTCCCAAGGGGACTTTGCTCAAAG
GTCTAGTGACAAAGAGGTATCCATGACAACCACGTATGAGTGACCCAATGTGAGTCTTCA
GATAGAGTCCAGGAGAATATTTGATGTCCCTGCCACTATGCTTGGACTTTCACTATTTGG
C

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               1-105, RF00020;U5; (K03170.1/1-115), RaveNnA Score=77.84

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1-105, RF00020;U5; (K03170.1/1-115), RaveNnA Score=77.84