Non-Coding RNA Search

Thy1-THY010031G03

Sequence:


               
               CTGTGTGGCTaagactatactttcagggatcatttctatagtctgtgactggagaagttt
ctctgaacgtgtagagcacccgaaaccacgaggaggagacgcagtgttctctcctgagcg
tgaagccggctcttggtgttgcctgtgcagctgccacttgcccttgatgatcgttctcct
ctctctggttgagagaggcagagggagagaacaccgtctgagtggtTTTGTGATGTATCT
TGTGTTGTCTGTGGTAGTGTTATTTTCCTTCCTGTGTTATGCTCAAGGTTAATCCTCTTG
GCATCTAGGTTTGTGCAAAGTTCTTTGAATTTCTTGCTGTTTCTCTTTAGTTTCAGCCTG
TATTTTATTTTGAGCTTTATAAGACAAGGAGTCTCTAGCTTTTTGTGTTTGGGGTGTTTT
TCCTTTTCTCTTGATACTTGGAAAAGTGAGTTTTTTCATGTGTGTTTTTGAATCTTCTAA
AATATTTCTTGGCTCAGCTGAGttttatttttgtgtctttttagggcaggaacctcagca
tatggaggttctcaggctaggggttaagtctgagctgtagctgctggcctgctacgccac
agcaacattggatccgagccTGGTGATCAAGCCCGTGTCCTCACTGTTGCGTGTCAGATT
TGTTACTGCTGAGCCATGACGGGTACTTACATCATTTTTTATTACGGTAGAATATAGACT
TTATTTTTATTTTGTTTTTGCCATATTTTTGTTTGTATTCTTAGCGTCGCGCCTGCGGAC
GTGGACGTTCCCGAGCTAGGGGTGGAATCGGAGCTGTAGCTGCCGGCCTGTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGTGGCTaagactatactttcagggatcatttctatagtctgtgactggagaagttt
ctctgaacgtgtagagcacccgaaaccacgaggaggagacgcagtgttctctcctgagcg
tgaagccggctcttggtgttgcctgtgcagctgccacttgcccttgatgatcgttctcct
ctctctggttgagagaggcagagggagagaacaccgtctgagtggtTTTGTGATGTATCT
TGTGTTGTCTGTGGTAGTGTTATTTTCCTTCCTGTGTTATGCTCAAGGTTAATCCTCTTG
GCATCTAGGTTTGTGCAAAGTTCTTTGAATTTCTTGCTGTTTCTCTTTAGTTTCAGCCTG
TATTTTATTTTGAGCTTTATAAGACAAGGAGTCTCTAGCTTTTTGTGTTTGGGGTGTTTT
TCCTTTTCTCTTGATACTTGGAAAAGTGAGTTTTTTCATGTGTGTTTTTGAATCTTCTAA
AATATTTCTTGGCTCAGCTGAGttttatttttgtgtctttttagggcaggaacctcagca
tatggaggttctcaggctaggggttaagtctgagctgtagctgctggcctgctacgccac
agcaacattggatccgagccTGGTGATCAAGCCCGTGTCCTCACTGTTGCGTGTCAGATT
TGTTACTGCTGAGCCATGACGGGTACTTACATCATTTTTTATTACGGTAGAATATAGACT
TTATTTTTATTTTGTTTTTGCCATATTTTTGTTTGTATTCTTAGCGTCGCGCCTGCGGAC
GTGGACGTTCCCGAGCTAGGGGTGGAATCGGAGCTGTAGCTGCCGGCCTGTGAT

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               11-225, RF00012;U3; (AF176810.1/1-214) : TF18479 (gnl|fantom2|FT21671) : U3A 
(gnl|combinedlit|LIT1414), RaveNnA Score=96.18

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               11-225, RF00012;U3; (AF176810.1/1-214) : TF18479 (gnl|fantom2|FT21671) : U3A 
(gnl|combinedlit|LIT1414), RaveNnA Score=96.18