Non-Coding RNA Search

Pig3-SRG8004O14

Sequence:


               
               AACAAACCTGGCATATATCACATGGACTGTCACTCTGATACTTTTCATTTTAAAATTCTT
CACCTTTTGATATTTTATCTAGGCCACAATAATGGCAGCCATCTATTTTTAGATGCTAGG
AAGTAACTCTTTAATATGAACATTCTCTTGCTCCTGAGGTGTTCAGTTTCTGCTACAGAA
GAATGTTGAAGTAGGAATGGCCTACATTCTGGACTCAAGAGTATCTTGAGGTTCCTTCTA
TTGGACCTGATTATAGTTAGCTGTGGTCGTTGGAGAGTTTCATTTAAAAATGTTTTGTAT
TTCAACTAATTATTTCTATGAGACCCTAAGAAAGACCTGATTTTAATAAGGTAACTTTGT
TATCTTAAACATATTTTGCAAATATCATACATTTAAGCAATCTAACAATAAATTATCCAG
CGCAACATTTTTTTTTTTTCCCCTCCAATGCATGCAGCGGCTTGATGTGGGATCCCAGTT
CCTAGACTAGGAATTGAACTCAGGCTGCAGCAGTAAAAGTACTGAGTCCTAACCACTAGA
CCACCAGGGAACTCCCCAGAGCAACACTTTTTAAAGTCTTAATAATTTCAGGTCTTCTTC
CCCAAAGAGGAAAAAGTGAAACTATATAACTGCCTAAGTTTATAATATCAAAAATTCTTT
TAAATCGATTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAACCTGGCATATATCACATGGACTGTCACTCTGATACTTTTCATTTTAAAATTCTT
CACCTTTTGATATTTTATCTAGGCCACAATAATGGCAGCCATCTATTTTTAGATGCTAGG
AAGTAACTCTTTAATATGAACATTCTCTTGCTCCTGAGGTGTTCAGTTTCTGCTACAGAA
GAATGTTGAAGTAGGAATGGCCTACATTCTGGACTCAAGAGTATCTTGAGGTTCCTTCTA
TTGGACCTGATTATAGTTAGCTGTGGTCGTTGGAGAGTTTCATTTAAAAATGTTTTGTAT
TTCAACTAATTATTTCTATGAGACCCTAAGAAAGACCTGATTTTAATAAGGTAACTTTGT
TATCTTAAACATATTTTGCAAATATCATACATTTAAGCAATCTAACAATAAATTATCCAG
CGCAACATTTTTTTTTTTTCCCCTCCAATGCATGCAGCGGCTTGATGTGGGATCCCAGTT
CCTAGACTAGGAATTGAACTCAGGCTGCAGCAGTAAAAGTACTGAGTCCTAACCACTAGA
CCACCAGGGAACTCCCCAGAGCAACACTTTTTAAAGTCTTAATAATTTCAGGTCTTCTTC
CCCAAAGAGGAAAAAGTGAAACTATATAACTGCCTAAGTTTATAATATCAAAAATTCTTT
TAAATCGATTATGA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               550-479, tRNA Pseudo : RF00005;tRNA; (BX571711.8/51314-51243), RaveNnA 
Score=41.73

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               550-479, tRNA Pseudo : RF00005;tRNA; (BX571711.8/51314-51243), RaveNnA 
Score=41.73