Ss1.1-Spl1-SPL01A030098.5.5
|
GAAACTTGAGGCCAACGGCCCTTGCAGCCTGTTTTGGATCAGGCTCTGGAGTGGACGCCC
CTCGCACAAGGGTCCTCGGGCGGCCGGAGACCCACGGGAGACGGCGGCGATGGCGGCTGA
GCCGGGCGGGTGGCTCGGGCCGGCGCTGGGGCTGCGGCTGCTGCTGGCGACCGCGCTGCA
GATGGTGTCTGCGTTCGGGGCAGAGTTTTCCTCGGAGTCCTGCAGGGAGCTGGGCTTCTC
CAGCAATTTGCTTTGCGGCTCCTGTGACCTTCTCGGACAGTTCGACCTTCTCCAGCTGGA
CCCCGACTGTAGAGGGTGCTGTCAGGAAGAAGCACAGTTTGAAACCAAGAAGCTGTATGC
AGGAGCTATCCTCGAAGTCTGCGGATGAAAGTTGGGGAGGTTCCCGCAAGTCCAAGCTTT
CGTCAGGAGTGATAAGCCCAAACTATTCAGAGGACTACAAATCAAGTATGTTCGTGGCTC
GGACCCTGTGCTCAAGCTTCTGGACGACAACGGGAACATTGCTGAAGAACTGAGTATCCT
CAAGTGGAACACAGACAGCGTGGAAGAATTCCTGAGTGAAAAGCTGCAGCGCGTCTAAAT
CTTGCTTAAATTTCGTCCTGTCCTTTTGTTACCTTGTCAGATGAAACAGCGCCTAGGAAA
TAGTTTTGGCTTCTTCCATTGATCAGTCTCTTACCGTGAGGCATTCGGCATTGAATTAGA
AGACGGAAGTGGCCGCAGAGCCCAGGGTAGGTAAGGAAGGGGCAAGCTTCGCATCATCTA
CTTGTAAAGCTCCGTCCTCCAGCACCTGTTGCTACCACTAACAGTGCTTGGTGATAACCT
TGTGGCTAATTAATGCAAATGATAGTTTGTGATAATTGGTCCAGTTTTTAAATGAGGGGG
GTTAATAAGGAAGATGCTTGCCGTGCCTCATGGGCTGTGTGCTCCCGGCAGGTAATGACA
GCCCTGCCAAGCAGATGAGGGATCCTGGGCCTCCGCAGGTGGCCAGCCTCTCAGAGCCTC
ATGGTTTTGTGTTACCCAGCCTCCCTGTTAATAGAAGCATTGTCATTTATAATGAATGCA
CTGCATACCACCTCTGTGGCTTTGTTCTTGTGAGACAGATTCGAGATCTATGGTAGGAGT
GAAACAGTCGCACAGATTCGCATTAATGAAGACTACACAGAAAACCTTTTTGAGGATTTG
TGTGGATCTGATGTTGAGCAAATTTTTGTGCTTTACATTCCCATAGAAGAGTCAATTTAA
AAATAAATGATCATTTGTAAGACCAAAATATTAATAAAAAAAAGTTTCAGAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAACTTGAGGCCAACGGCCCTTGCAGCCTGTTTTGGATCAGGCTCTGGAGTGGACGCCC
CTCGCACAAGGGTCCTCGGGCGGCCGGAGACCCACGGGAGACGGCGGCGATGGCGGCTGA
GCCGGGCGGGTGGCTCGGGCCGGCGCTGGGGCTGCGGCTGCTGCTGGCGACCGCGCTGCA
GATGGTGTCTGCGTTCGGGGCAGAGTTTTCCTCGGAGTCCTGCAGGGAGCTGGGCTTCTC
CAGCAATTTGCTTTGCGGCTCCTGTGACCTTCTCGGACAGTTCGACCTTCTCCAGCTGGA
CCCCGACTGTAGAGGGTGCTGTCAGGAAGAAGCACAGTTTGAAACCAAGAAGCTGTATGC
AGGAGCTATCCTCGAAGTCTGCGGATGAAAGTTGGGGAGGTTCCCGCAAGTCCAAGCTTT
CGTCAGGAGTGATAAGCCCAAACTATTCAGAGGACTACAAATCAAGTATGTTCGTGGCTC
GGACCCTGTGCTCAAGCTTCTGGACGACAACGGGAACATTGCTGAAGAACTGAGTATCCT
CAAGTGGAACACAGACAGCGTGGAAGAATTCCTGAGTGAAAAGCTGCAGCGCGTCTAAAT
CTTGCTTAAATTTCGTCCTGTCCTTTTGTTACCTTGTCAGATGAAACAGCGCCTAGGAAA
TAGTTTTGGCTTCTTCCATTGATCAGTCTCTTACCGTGAGGCATTCGGCATTGAATTAGA
AGACGGAAGTGGCCGCAGAGCCCAGGGTAGGTAAGGAAGGGGCAAGCTTCGCATCATCTA
CTTGTAAAGCTCCGTCCTCCAGCACCTGTTGCTACCACTAACAGTGCTTGGTGATAACCT
TGTGGCTAATTAATGCAAATGATAGTTTGTGATAATTGGTCCAGTTTTTAAATGAGGGGG
GTTAATAAGGAAGATGCTTGCCGTGCCTCATGGGCTGTGTGCTCCCGGCAGGTAATGACA
GCCCTGCCAAGCAGATGAGGGATCCTGGGCCTCCGCAGGTGGCCAGCCTCTCAGAGCCTC
ATGGTTTTGTGTTACCCAGCCTCCCTGTTAATAGAAGCATTGTCATTTATAATGAATGCA
CTGCATACCACCTCTGTGGCTTTGTTCTTGTGAGACAGATTCGAGATCTATGGTAGGAGT
GAAACAGTCGCACAGATTCGCATTAATGAAGACTACACAGAAAACCTTTTTGAGGATTTG
TGTGGATCTGATGTTGAGCAAATTTTTGTGCTTTACATTCCCATAGAAGAGTCAATTTAA
AAATAAATGATCATTTGTAAGACCAAAATATTAATAAAAAAAAGTTTCAGAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1157-1222, , RaveNnA Score=24.63 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
1157-1222, , RaveNnA Score=24.63 |
Human gene identifier and UTR site,
human gene reading direction
|
184-352, gnl|bosTau2|chr3 (42770723-42770555) |
|
184-352, gnl|canFam2|chr6 (64367264-64367118) |
|
184-352, gnl|danRer3|chr2 (13931504-13931641) |
|
184-352, gnl|dasNov1|scaffold_266 (43283-43429) |
|
184-352, gnl|fr1|chrUn (45788218-45788364) |
|
184-352, gnl|galGal2|chr8 (16240125-16239988) |
|
184-352, gnl|hg17|chr1 (87080975-87081121) |
|
184-352, gnl|Hg17|chr1 (87081153-87080985) |
|
184-352, gnl|loxAfr1|scaffold_66417 (9881-10027) |
|
184-352, gnl|mm7|chr3 (144470824-144470678) |
|
184-352, gnl|Mm7|chr3 (144470644-144470812) |
|
184-352, gnl|monDom2|scaffold_123 (783975-784117) |
|
184-352, gnl|oryCun1|scaffold_209760 (27208-27062) |
|
184-352, gnl|panTro1|chr1 (85738435-85738581) |
|
184-352, gnl|rheMac2|chr1 (89596822-89596968) |
|
184-352, gnl|rn3|chr2 (242755616-242755470) |
|
184-352, gnl|tetNig1|chr15 (3549502-3549640) |
|
184-352, gnl|xenTro1|scaffold_74 (20019-19882) |
| |
|
465-1313, gnl|bosTau2|chr3 (42737457-42736598) |
|
465-1313, gnl|Hg17|chr1 (87041311-87040429) |
|
465-1313, gnl|Mm7|chr3 (144489880-144490720) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
184-352, gnl|bosTau2|chr3 (42770723-42770555) |
|
184-352, gnl|canFam2|chr6 (64367264-64367118) |
|
184-352, gnl|danRer3|chr2 (13931504-13931641) |
|
184-352, gnl|dasNov1|scaffold_266 (43283-43429) |
|
184-352, gnl|fr1|chrUn (45788218-45788364) |
|
184-352, gnl|galGal2|chr8 (16240125-16239988) |
|
184-352, gnl|hg17|chr1 (87080975-87081121) |
|
184-352, gnl|Hg17|chr1 (87081153-87080985) |
|
184-352, gnl|loxAfr1|scaffold_66417 (9881-10027) |
|
184-352, gnl|mm7|chr3 (144470824-144470678) |
|
184-352, gnl|Mm7|chr3 (144470644-144470812) |
|
184-352, gnl|monDom2|scaffold_123 (783975-784117) |
|
184-352, gnl|oryCun1|scaffold_209760 (27208-27062) |
|
184-352, gnl|panTro1|chr1 (85738435-85738581) |
|
184-352, gnl|rheMac2|chr1 (89596822-89596968) |
|
184-352, gnl|rn3|chr2 (242755616-242755470) |
|
184-352, gnl|tetNig1|chr15 (3549502-3549640) |
|
184-352, gnl|xenTro1|scaffold_74 (20019-19882) |
| |
|
465-1313, gnl|bosTau2|chr3 (42737457-42736598) |
|
465-1313, gnl|Hg17|chr1 (87041311-87040429) |
|
465-1313, gnl|Mm7|chr3 (144489880-144490720) |
|
pgl (1.18483) |
|
pro (1.02407) |
|
bla (0.87043) |
|
cut (0.849618) |
|
col (0.780031) |
|
spl (0.715922) |
|
csk (0.70373) |
|
che (0.68157) |
|
fhi (0.678311) |
|
sme (0.610874) |
|
nlu (0.575043) |
|
lyg (0.532411) |
|
fty (0.527519) |
|
sug (0.509165) |
|
cki (0.495704) |
|
cbe (0.478469) |
|
mgp (0.461361) |
|
eli (0.455443) |
|
pty (0.428143) |
|
cst (0.420109) |
|
nca (0.410621) |
|
nmm (0.398406) |
|
kid (0.389206) |
|
ova (0.387397) |
|
elu (0.385356) |
|
cmu (0.372787) |
|
nep (0.36785) |
|
cly (0.361925) |
|
ebs (0.354904) |
|
ton (0.351) |
|
med (0.348756) |
|
cje (0.330469) |
|
csp (0.322373) |
|
cty (0.31224) |
|
lun (0.300978) |
|
fat (0.294855) |
|
ldo (0.291008) |
|
cga (0.279096) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
thg (0.253582) |
|
cbl (0.229595) |
|
nms (0.213858) |
|
tes (0.207814) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
sag (0.182715) |
|
gul (0.177588) |
|
ill (0.175593) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
mga (0.160205) |
|
cag (0.151194) |
|
isp (0.150376) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ret (0.128733) |
|
ese (0.126502) |
|
tra (0.123092) |
|
eep (0.122564) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
pgl (1.18483) |
|
pro (1.02407) |
|
bla (0.87043) |
|
cut (0.849618) |
|
col (0.780031) |
|
spl (0.715922) |
|
csk (0.70373) |
|
che (0.68157) |
|
fhi (0.678311) |
|
sme (0.610874) |
|
nlu (0.575043) |
|
lyg (0.532411) |
|
fty (0.527519) |
|
sug (0.509165) |
|
cki (0.495704) |
|
cbe (0.478469) |
|
mgp (0.461361) |
|
eli (0.455443) |
|
pty (0.428143) |
|
cst (0.420109) |
|
nca (0.410621) |
|
nmm (0.398406) |
|
kid (0.389206) |
|
ova (0.387397) |
|
elu (0.385356) |
|
cmu (0.372787) |
|
nep (0.36785) |
|
cly (0.361925) |
|
ebs (0.354904) |
|
ton (0.351) |
|
med (0.348756) |
|
cje (0.330469) |
|
csp (0.322373) |
|
cty (0.31224) |
|
lun (0.300978) |
|
fat (0.294855) |
|
ldo (0.291008) |
|
cga (0.279096) |
|
fce (0.271592) |
|
ssp (0.271039) |
|
thg (0.253582) |
|
cbl (0.229595) |
|
nms (0.213858) |
|
tes (0.207814) |
|
hea (0.204499) |
|
jej (0.197844) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
sag (0.182715) |
|
gul (0.177588) |
|
ill (0.175593) |
|
sin (0.174948) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
mga (0.160205) |
|
cag (0.151194) |
|
isp (0.150376) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
pla (0.133672) |
|
ute (0.132784) |
|
cov (0.132153) |
|
ret (0.128733) |
|
ese (0.126502) |
|
tra (0.123092) |
|
eep (0.122564) |
|
eru (0.120048) |
|
clu (0.119646) |
|
ecc (0.115035) |
|
spc (0.113366) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
