Non-Coding RNA Search

raor015_p22r1.y1

Sequence:


               
               AAGGTGTCCACGCAGAAAATGAAGCTTTCCATTTCCCCAGGACTAGGCTGTTCACTCTGA
AATGCAAGGCAggagttccctggtggctcagcagattaagaatccggcatcgttactgct
gtggcacaggttcgatccctggccggggaacttccccatgTCCAACCAAAAAATAAAAAA
ATGAAATGCAAGGTTGCAGGAAGGGGAGAGGAGATTAGGGACGAGGAGCCCGAATCTTTG
CATCAGATTCACACAGGGATTTCCACCCTCCCTCTGCCACTTACCAGCTCGGTGGCTACA
GGCAAGTTAAACCCTCAAGCTTCAGTTTTGTTGCCTGTAAACTGAAGATGAAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTGTCCACGCAGAAAATGAAGCTTTCCATTTCCCCAGGACTAGGCTGTTCACTCTGA
AATGCAAGGCAggagttccctggtggctcagcagattaagaatccggcatcgttactgct
gtggcacaggttcgatccctggccggggaacttccccatgTCCAACCAAAAAATAAAAAA
ATGAAATGCAAGGTTGCAGGAAGGGGAGAGGAGATTAGGGACGAGGAGCCCGAATCTTTG
CATCAGATTCACACAGGGATTTCCACCCTCCCTCTGCCACTTACCAGCTCGGTGGCTACA
GGCAAGTTAAACCCTCAAGCTTCAGTTTTGTTGCCTGTAAACTGAAGATGAAAATCA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               77-150, tRNA Asn, RaveNnA Score=33.26

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               77-150, tRNA Asn, RaveNnA Score=33.26

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               aor (0.195274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)