Non-Coding RNA Search

Spl1-SPL01C030064

Sequence:


               
               AGAAGCCCAGAGCAACCCCTCAGATTCAGAGAAAGTGCCCAGAGCTCACAGATAATATCT
CCGCGTGATGGAAGGCGGAGCATGTCCAGAACCCGGGACTTCATGTCACCCATGACTGCC
CACATGCTGTACCCTTCCCCCCACCAGATCAACTCCCCACAACTTACATGGACAAAGACT
GAGATTTCAGAGTCTCAGTTAGCTGATTTGGAAAAAAAATTTATATCATTTTTTGACCTT
GGGGAGAGAAAGGTTTGCTCAGCAAGTGAATAACCTGCAAACGATCAAAAGAAGAGGCAT
CAGGGAGTTCCCTGGTGGTCTAGTGGTTAGGATCCAGTGCTTTCACTACTATAGCCCTGG
TTCAGTCCCTGGTCTGGAAACTGAGATCCAACATCCAGCCGCTGCGCTGCAGCCAAAAGA
AGAAGAGGGGGAAGGAGAAGAGGGCATCATCCTCCTATTAGTCAGGATCGCCCTGGTTGT
GAGTAACAGAAGCTAGCTCTGGTGAAAAGGGACCTCCTTGGATGCTCACATCAGCATGAG
AGGGAGGATGGGAGCAGCCAGCCTCAGCAGCCAGTGGAGCTGCAGATCCACATGCCACTT
GGGCTCCCACTCAGCTCTGTTGAAGCCTGAGTGCCAGTTCCATTGTCTCAGACTGGCTAT
GTGGAGGGGACATAGCTGCTGACAGCCTCCCTGCCTTTGCCACCAGCAAGGGACAGAAGC
ATGTTCTCTTTGATCCCACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCCCAGAGCAACCCCTCAGATTCAGAGAAAGTGCCCAGAGCTCACAGATAATATCT
CCGCGTGATGGAAGGCGGAGCATGTCCAGAACCCGGGACTTCATGTCACCCATGACTGCC
CACATGCTGTACCCTTCCCCCCACCAGATCAACTCCCCACAACTTACATGGACAAAGACT
GAGATTTCAGAGTCTCAGTTAGCTGATTTGGAAAAAAAATTTATATCATTTTTTGACCTT
GGGGAGAGAAAGGTTTGCTCAGCAAGTGAATAACCTGCAAACGATCAAAAGAAGAGGCAT
CAGGGAGTTCCCTGGTGGTCTAGTGGTTAGGATCCAGTGCTTTCACTACTATAGCCCTGG
TTCAGTCCCTGGTCTGGAAACTGAGATCCAACATCCAGCCGCTGCGCTGCAGCCAAAAGA
AGAAGAGGGGGAAGGAGAAGAGGGCATCATCCTCCTATTAGTCAGGATCGCCCTGGTTGT
GAGTAACAGAAGCTAGCTCTGGTGAAAAGGGACCTCCTTGGATGCTCACATCAGCATGAG
AGGGAGGATGGGAGCAGCCAGCCTCAGCAGCCAGTGGAGCTGCAGATCCACATGCCACTT
GGGCTCCCACTCAGCTCTGTTGAAGCCTGAGTGCCAGTTCCATTGTCTCAGACTGGCTAT
GTGGAGGGGACATAGCTGCTGACAGCCTCCCTGCCTTTGCCACCAGCAAGGGACAGAAGC
ATGTTCTCTTTGATCCCACATT

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               309-380, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/121779-121850), RaveNnA 
Score=25.26

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               309-380, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/121779-121850), RaveNnA 
Score=25.26