Non-Coding RNA Search

Ss1.1-LyN1-MLN01A050104.5

Sequence:


               
               GCCTGACTGTTAAAAGGAGGCGCCTCCTGGACCCCCCTCTGCTGTTCCAGTCGGCGCCTC
TACCCACTCTGCCATGTGCGCTGCTCAGCGTTCCGCTGCCGCCCTAGCGGCGGTGGCCCC
ACGCTCGGTGTATGCCTTCTCTGCGCGCCCGCTGGCTGGAGGGGAGCCCATAAGCCTGGG
CTCCCTACGGGGCAAGGTGCTGCTCATTGAGAACGTAGCGTCGCTCTGAGGCACAACGGT
GCGGGACTACACCCAGATGAATGAGCTGCAGCGGCGCCTCGGGCCCCGGGGCCTGGTCGT
GCTCGGCTTCCCGTGCAACCAGTTTGGACATCAGGAAAATGCCAAGAATGAGGAGATCCT
GAATTGCCTCAAGTACGTCCGACCAGGCGGCGGGTTCGAGCCCAACTTCATGCTCTTCGA
GAAGTGTGAGGTGAATGGCGCAAATGCTCACCCGCTCTTCGCCTTCCTCCGCGAGGCTCT
GCCCACACCCAGTGACGATGCCACTGCCCTCATGACCGACCCCAAGTTTATCACCTGGTC
TCCAGTGTGTCGCAATGACATCGCATGGAACTTCGAGAAGTTCCTGGTGGGCCCAGACGG
TGTGCCCCTGCGCAGGTACAGCCGTCGCTTTCTGACCATCGATATCGAGCCTGACATCGA
AGCCCTGCTGTCCCAGGAGCCTAGCAGTGCCTAGAGTGCCCCCTCCTACCCCTGCTGCTT
GGCAGTTACAGTGCTACTCTCGGGATTTTATCCATGAAAGTGTTTCCTCTAAACCTATGT
GGAGGAACACCTGATGTCCAGGAAAATCCCCTGAGATGGGCGCTGGTCCTGTCCATCCCA
GCTTCCCCTTTCCCAGACCACAGTTCCTCACTAATAAAGTGCTGAGTGTCACCAGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGACTGTTAAAAGGAGGCGCCTCCTGGACCCCCCTCTGCTGTTCCAGTCGGCGCCTC
TACCCACTCTGCCATGTGCGCTGCTCAGCGTTCCGCTGCCGCCCTAGCGGCGGTGGCCCC
ACGCTCGGTGTATGCCTTCTCTGCGCGCCCGCTGGCTGGAGGGGAGCCCATAAGCCTGGG
CTCCCTACGGGGCAAGGTGCTGCTCATTGAGAACGTAGCGTCGCTCTGAGGCACAACGGT
GCGGGACTACACCCAGATGAATGAGCTGCAGCGGCGCCTCGGGCCCCGGGGCCTGGTCGT
GCTCGGCTTCCCGTGCAACCAGTTTGGACATCAGGAAAATGCCAAGAATGAGGAGATCCT
GAATTGCCTCAAGTACGTCCGACCAGGCGGCGGGTTCGAGCCCAACTTCATGCTCTTCGA
GAAGTGTGAGGTGAATGGCGCAAATGCTCACCCGCTCTTCGCCTTCCTCCGCGAGGCTCT
GCCCACACCCAGTGACGATGCCACTGCCCTCATGACCGACCCCAAGTTTATCACCTGGTC
TCCAGTGTGTCGCAATGACATCGCATGGAACTTCGAGAAGTTCCTGGTGGGCCCAGACGG
TGTGCCCCTGCGCAGGTACAGCCGTCGCTTTCTGACCATCGATATCGAGCCTGACATCGA
AGCCCTGCTGTCCCAGGAGCCTAGCAGTGCCTAGAGTGCCCCCTCCTACCCCTGCTGCTT
GGCAGTTACAGTGCTACTCTCGGGATTTTATCCATGAAAGTGTTTCCTCTAAACCTATGT
GGAGGAACACCTGATGTCCAGGAAAATCCCCTGAGATGGGCGCTGGTCCTGTCCATCCCA
GCTTCCCCTTTCCCAGACCACAGTTCCTCACTAATAAAGTGCTGAGTGTCACCAGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               GPX1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               GPX1_PIG

ncRNA annotation: 2 entry(ies)

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               745-807, RF00031;SECIS; (AF532927.1/678-740), blast E-value=2e-28
               

               
               745-807, , RaveNnA Score=24.52

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               745-807, RF00031;SECIS; (AF532927.1/678-740), blast E-value=2e-28
               

               
               745-807, , RaveNnA Score=24.52

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               332-669, gnl|bosTau2|chr10 (52379473-52379136)
               

               
               332-669, gnl|Hg17|chr14 (64476312-64475975)
               

               
               332-669, gnl|Mm7|chr12 (74751688-74751351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               332-669, gnl|bosTau2|chr10 (52379473-52379136)
               

               
               332-669, gnl|Hg17|chr14 (64476312-64475975)
               

               
               332-669, gnl|Mm7|chr12 (74751688-74751351)

Expressed library(ies): 45 entry(ies)

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Expressed library(ies): 45 entry(ies)

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               cov (3.30382)
               

               
               cly (3.01605)
               

               
               cag (2.41911)
               

               
               cli (2.29218)
               

               
               csp (1.93424)
               

               
               eli (1.66996)
               

               
               med (1.27877)
               

               
               ill (0.877963)
               

               
               lnt (0.853849)
               

               
               nco (0.808669)
               

               
               ute (0.796707)
               

               
               nbm (0.794597)
               

               
               nlu (0.766724)
               

               
               nep (0.7357)
               

               
               cga (0.558191)
               

               
               nmm (0.531209)
               

               
               fty (0.527519)
               

               
               mcp (0.511945)
               

               
               jca (0.45584)
               

               
               lun (0.451467)
               

               
               nca (0.410621)
               

               
               eep (0.367692)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               jej (0.296765)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (3.30382)
               

               
               cly (3.01605)
               

               
               cag (2.41911)
               

               
               cli (2.29218)
               

               
               csp (1.93424)
               

               
               eli (1.66996)
               

               
               med (1.27877)
               

               
               ill (0.877963)
               

               
               lnt (0.853849)
               

               
               nco (0.808669)
               

               
               ute (0.796707)
               

               
               nbm (0.794597)
               

               
               nlu (0.766724)
               

               
               nep (0.7357)
               

               
               cga (0.558191)
               

               
               nmm (0.531209)
               

               
               fty (0.527519)
               

               
               mcp (0.511945)
               

               
               jca (0.45584)
               

               
               lun (0.451467)
               

               
               nca (0.410621)
               

               
               eep (0.367692)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               jej (0.296765)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)

	745-807, RF00031;SECIS; (AF532927.1/678-740), blast E-value=2e-28
	745-807, , RaveNnA Score=24.52

	332-669, gnl\|bosTau2\|chr10 (52379473-52379136)
	332-669, gnl\|Hg17\|chr14 (64476312-64475975)
	332-669, gnl\|Mm7\|chr12 (74751688-74751351)

	cov (3.30382)
	cly (3.01605)
	cag (2.41911)
	cli (2.29218)
	csp (1.93424)
	eli (1.66996)
	med (1.27877)
	ill (0.877963)
	lnt (0.853849)
	nco (0.808669)
	ute (0.796707)
	nbm (0.794597)
	nlu (0.766724)
	nep (0.7357)
	cga (0.558191)
	nmm (0.531209)
	fty (0.527519)
	mcp (0.511945)
	jca (0.45584)
	lun (0.451467)
	nca (0.410621)
	eep (0.367692)
	cut (0.339847)
	cki (0.330469)
	jej (0.296765)
	fce (0.271592)
	ebs (0.236602)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	fli (0.202881)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	sto (0.179824)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	nje (0.16592)
	mga (0.160205)
	hyp (0.142837)
	ssp (0.13552)
	ecc (0.115035)