Non-Coding RNA Search

Ss1.1-Ova1-OVR010008B07.5

Sequence:


               
               AAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAGAAAAGAAAAAAAAAGAAGAAAAGAAAGA
AAGAAAGAAAGACAAAGTTGGACGCATACTACTTTCGCGGCAGTCAGCAGGGACTGTGAG
CCCCCGCCTCGCACTGTCTCTCCAGAGTTGAGAGCAAGGAAGGGCGGAGCAAGTGGACGT
GGCGGTTGGAGGTGCCGGGGATTGAACCCGGGGCCTCGTGCATGCTAAGCACGCGCTCTA
CCACTGAGCTACACCCCCGCGGCTGCCGAAACTTCAGAGGCAGGAAAAGGGAAAGCAAAC
AAACAACCAAACACACAAACAAAAAATGGTATGGCAACTCCTCACGTGTTGGTTCGAAGC
TCCGTTGTGTACAACCCGGTTACTTGCGAAACTCCTATTCCCTTTCGCCGAGGACATGAG
GAGAAAGGCAACCGAATGCCGGCCTAAAATTTAGGCGCCCTTCCTAGGATCTAGTCCCGC
TTGTCAGCCTACCCCAGTGTCAGGCCTACAGACAACTTGAATGGAGGAAGGCAAAGAAGA
GCCCTTTCCTAGTTCTGCCTGTTAAAAAAAGCCTAGACTCAAAGACACCCAAGGGGCAAG
GAGGAGAGCTGGTCCCCCATCTCAGCAGCTTAATACACATCCCCCCGGATGGAACCAAAG
CTCCGGGCAAAACTGGTCACTAGAAGCACTAGGGCAGGAAAAGTACAAGATGCCCTAGAC
AGTCTTTCGAGTGCTCAAAAGAGGATGGCGTGCCCCAAAGAGCACAGTGTCTTCGAGTCC
ACTCTTGCAAACACTGAGCATTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAGAAAAGAAAAAAAAAGAAGAAAAGAAAGA
AAGAAAGAAAGACAAAGTTGGACGCATACTACTTTCGCGGCAGTCAGCAGGGACTGTGAG
CCCCCGCCTCGCACTGTCTCTCCAGAGTTGAGAGCAAGGAAGGGCGGAGCAAGTGGACGT
GGCGGTTGGAGGTGCCGGGGATTGAACCCGGGGCCTCGTGCATGCTAAGCACGCGCTCTA
CCACTGAGCTACACCCCCGCGGCTGCCGAAACTTCAGAGGCAGGAAAAGGGAAAGCAAAC
AAACAACCAAACACACAAACAAAAAATGGTATGGCAACTCCTCACGTGTTGGTTCGAAGC
TCCGTTGTGTACAACCCGGTTACTTGCGAAACTCCTATTCCCTTTCGCCGAGGACATGAG
GAGAAAGGCAACCGAATGCCGGCCTAAAATTTAGGCGCCCTTCCTAGGATCTAGTCCCGC
TTGTCAGCCTACCCCAGTGTCAGGCCTACAGACAACTTGAATGGAGGAAGGCAAAGAAGA
GCCCTTTCCTAGTTCTGCCTGTTAAAAAAAGCCTAGACTCAAAGACACCCAAGGGGCAAG
GAGGAGAGCTGGTCCCCCATCTCAGCAGCTTAATACACATCCCCCCGGATGGAACCAAAG
CTCCGGGCAAAACTGGTCACTAGAAGCACTAGGGCAGGAAAAGTACAAGATGCCCTAGAC
AGTCTTTCGAGTGCTCAAAAGAGGATGGCGTGCCCCAAAGAGCACAGTGTCTTCGAGTCC
ACTCTTGCAAACACTGAGCATTGA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               258-187, tRNA Ala : RF00005;tRNA; (AB042945.1/8-79) : T3 
(gnl|combinedlit|LIT2179), RaveNnA Score=69.18

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               258-187, tRNA Ala : RF00005;tRNA; (AB042945.1/8-79) : T3 
(gnl|combinedlit|LIT2179), RaveNnA Score=69.18