Non-Coding RNA Search

Ova1-OVRM10096A05

Sequence:


               
               AACAGGATTCCCAGACCCCTTTCCCCTGCCCCCACCCCGCCGGCCACCCAGCTCACAGAT
CACTGGCAGCCGTGACCCACCTGCCACTAACAGATGGATGCCTTGAGAATTCTCTGGAGG
AAGAGAATAGCTTTAGAGAAAAAGCCACCAGACCCTAACATGTGGGAATCCCTCAATAAA
AAAAGCCTCCAGAGAAATCTGTGGTGCAAAAAGCCCTGTGCACTCACAGCTCTTCCACAG
AGCTTTTTGGTATCTCTCCAACCTGAGACACTTGAGGAAAGTAAGAAGAAAACAAATAAA
GACAGAGACAACAGAAGGAACCCTGTGATCAATATCCTAAGGGGCATAAGGGTAGAAATT
GTAGAATGTTATGGAAAAGGAACAGATTAATAAGAAAAATAGTGGATACAGCAGTTATCA
CAACCTTGTAAATTAACTATACTTCAAAAAACCTTAAAAAAAAAAAAATAGTGAagttcc
ctggtagcctagtggttaagagttcacctttgtcactgctatggcatgggttcaattcct
ggcctgggaacttctacatgcTATGGGCACAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGGATTCCCAGACCCCTTTCCCCTGCCCCCACCCCGCCGGCCACCCAGCTCACAGAT
CACTGGCAGCCGTGACCCACCTGCCACTAACAGATGGATGCCTTGAGAATTCTCTGGAGG
AAGAGAATAGCTTTAGAGAAAAAGCCACCAGACCCTAACATGTGGGAATCCCTCAATAAA
AAAAGCCTCCAGAGAAATCTGTGGTGCAAAAAGCCCTGTGCACTCACAGCTCTTCCACAG
AGCTTTTTGGTATCTCTCCAACCTGAGACACTTGAGGAAAGTAAGAAGAAAACAAATAAA
GACAGAGACAACAGAAGGAACCCTGTGATCAATATCCTAAGGGGCATAAGGGTAGAAATT
GTAGAATGTTATGGAAAAGGAACAGATTAATAAGAAAAATAGTGGATACAGCAGTTATCA
CAACCTTGTAAATTAACTATACTTCAAAAAACCTTAAAAAAAAAAAAATAGTGAagttcc
ctggtagcctagtggttaagagttcacctttgtcactgctatggcatgggttcaattcct
ggcctgggaacttctacatgcTATGGGCACAGCCA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               478-550, tRNA Pseudo, RaveNnA Score=27.57

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               478-550, tRNA Pseudo, RaveNnA Score=27.57