Non-Coding RNA Search

Ss1.1-rmga12_b5.5

Sequence:


               
               ATAAAACTGTTGCTCCAACTTAAACAAATATAGAATTCATCATTACAATTATGGTATCAC
TTGGGAGTTCCCTGGTGGTCTAATGGCTAGGATTTGGCACTGTCACTGCTGCAGCCTAGT
TTCAGTCCCTGGTCTGGGAACTGAGATCCTACATCAAGCCACTGCATGGCCATGCCAAAA
AAAACAAAATTACAAAATCACTGGTATTTGTTGAGCTCCAATGTCAAGCTCATAATACTT
TAAACATAAAAAAGAATATGTGATAGAAGCATAATAATCAATTGCTTATAACAATTTAAA
GGAAAATATCTCAATGTAAAATTATTAACATGTATTGCTGGCTCATTCACACTTTTCTAT
TCCTGTTGTACTTTTGGTGGTGGGTGTTTTGGTTTGATTGATTTGTTTTGCTTGGGCTTC
TCCTCTGGGTAATTAATTAGTGTTAACTATTAAATCTATTTTGACATAGAATTTTATATT
TAATTAGACCAGTTTCCTCTCTATTCCAATCAGGAAATGAATGTCATATGGGTATGAAAA
GGGACCAAGTTTAGAAAAAGCCAAACCCATTTATAGAGTTATGCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAACTGTTGCTCCAACTTAAACAAATATAGAATTCATCATTACAATTATGGTATCAC
TTGGGAGTTCCCTGGTGGTCTAATGGCTAGGATTTGGCACTGTCACTGCTGCAGCCTAGT
TTCAGTCCCTGGTCTGGGAACTGAGATCCTACATCAAGCCACTGCATGGCCATGCCAAAA
AAAACAAAATTACAAAATCACTGGTATTTGTTGAGCTCCAATGTCAAGCTCATAATACTT
TAAACATAAAAAAGAATATGTGATAGAAGCATAATAATCAATTGCTTATAACAATTTAAA
GGAAAATATCTCAATGTAAAATTATTAACATGTATTGCTGGCTCATTCACACTTTTCTAT
TCCTGTTGTACTTTTGGTGGTGGGTGTTTTGGTTTGATTGATTTGTTTTGCTTGGGCTTC
TCCTCTGGGTAATTAATTAGTGTTAACTATTAAATCTATTTTGACATAGAATTTTATATT
TAATTAGACCAGTTTCCTCTCTATTCCAATCAGGAAATGAATGTCATATGGGTATGAAAA
GGGACCAAGTTTAGAAAAAGCCAAACCCATTTATAGAGTTATGCCTTC

ncRNA annotation: 1 entry(ies)

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               69-140, RF00005;tRNA; (AC091401.2/173841-173770), RaveNnA Score=30

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               69-140, RF00005;tRNA; (AC091401.2/173841-173770), RaveNnA Score=30

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               mga (0.160205)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)

	mga (0.160205)
	liv (0.146284)
	kid (0.129735)
	ecc (0.115035)
	spc (0.113366)