Non-Coding RNA Search

Pla1-C0000031_K16

Sequence:


               
               TATCTGCAAAATTCCTTTGCCATATAAAGTAACATATTCCTAGAGTCTGTGGATTAAGAT
ATGGATTTGTGTAGGGTATTATCCAGCCTATCACATGGTTTATTGGGCAAACACTGCAGT
ATGAGATTATAAGGTTTTATTTTCTAGAAAAAAAAATCTGTTTGGTGTCTAAGATACTTG
CTTAGAAAAAGCTCACCTATTACAGTTTGAAACATTAAAATAGAACATAACAgtgctcgc
ttcggcagcacatatactaaaattggaccgatacagagaagattagcatggcccctgcgc
aaggatgacatgcaaattcgtgaggcgttccatatttttaattagagcaaaaataaaccc
atgggacctaatcaaactgaaaagcttttgcacagcaaaggaaatcaaaaagaaaacaaa
aagacaacttacagaatgggagaaaatagtttcaaatgatgcaaccgacaagggcttaat
ctc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATCTGCAAAATTCCTTTGCCATATAAAGTAACATATTCCTAGAGTCTGTGGATTAAGAT
ATGGATTTGTGTAGGGTATTATCCAGCCTATCACATGGTTTATTGGGCAAACACTGCAGT
ATGAGATTATAAGGTTTTATTTTCTAGAAAAAAAAATCTGTTTGGTGTCTAAGATACTTG
CTTAGAAAAAGCTCACCTATTACAGTTTGAAACATTAAAATAGAACATAACAgtgctcgc
ttcggcagcacatatactaaaattggaccgatacagagaagattagcatggcccctgcgc
aaggatgacatgcaaattcgtgaggcgttccatatttttaattagagcaaaaataaaccc
atgggacctaatcaaactgaaaagcttttgcacagcaaaggaaatcaaaaagaaaacaaa
aagacaacttacagaatgggagaaaatagtttcaaatgatgcaaccgacaagggcttaat
ctc

ncRNA annotation: 1 entry(ies)

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               233-339, RF00026;U6; (AC096661.1/42228-42122), RaveNnA Score=127.49

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               233-339, RF00026;U6; (AC096661.1/42228-42122), RaveNnA Score=127.49