Non-Coding RNA Search

rpigca0_011734.y1

Sequence:


               
               ATTGTTGTGAAATAATATATATCATATTGCCCATGTGTTTTTTTCCttggctgtgcctgt
ggcatgtggaagttcctgggcagggtttgaacctgcccatcggtgacctgagccacagca
gtgacaatgccggatccttaacctgctgaaccaccagggaactcccTTGACCATGCATTT
TATTTTATTTTGTTGTATTTTATTTTTTGCCTAGTACTATTTTATTATAAGAATATATCA
TATTATTTGACCATGCATTTTAAAACTACACTGCTCCACTTAAGGAGAATCATTGTTCTT
TTTGTGAGTAAGCCTGGAGAGTTTTAAGCCAGAGAGTGCTGTGAATGTACTTGCAATTTG
GAAAGATTTGGTTGTGATGAGGAGAGCTTGTGAGAACGAATTCACAGAAGGTGGAGAAGA
CCGCTGGTTCATTCCGAAACCGTAAACGAGCATCTGCTGTGTGCCAGACATCTTGTGGGC
CCTGAGTGGACGAGACATCCCCGCCCACCCGCGTGGAGTTAAGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGTTGTGAAATAATATATATCATATTGCCCATGTGTTTTTTTCCttggctgtgcctgt
ggcatgtggaagttcctgggcagggtttgaacctgcccatcggtgacctgagccacagca
gtgacaatgccggatccttaacctgctgaaccaccagggaactcccTTGACCATGCATTT
TATTTTATTTTGTTGTATTTTATTTTTTGCCTAGTACTATTTTATTATAAGAATATATCA
TATTATTTGACCATGCATTTTAAAACTACACTGCTCCACTTAAGGAGAATCATTGTTCTT
TTTGTGAGTAAGCCTGGAGAGTTTTAAGCCAGAGAGTGCTGTGAATGTACTTGCAATTTG
GAAAGATTTGGTTGTGATGAGGAGAGCTTGTGAGAACGAATTCACAGAAGGTGGAGAAGA
CCGCTGGTTCATTCCGAAACCGTAAACGAGCATCTGCTGTGTGCCAGACATCTTGTGGGC
CCTGAGTGGACGAGACATCCCCGCCCACCCGCGTGGAGTTAAGTTCTT

ncRNA annotation: 1 entry(ies)

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               160-72, tRNA Asp, RaveNnA Score=32.56

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               160-72, tRNA Asp, RaveNnA Score=32.56

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)