Non-Coding RNA Search

rspc001_l6.y1

Sequence:


               
               GAGgcagcaatccccatagcttcctcactaaaaaaccctgaatcacccgtatcataaatt
actcaatccccaagcccattaaacttaaaaataatttctacttcctcttccttcaatgca
taataaaccatacaaaactccattattaaaccagaaacaaatgctccaaaaacagtctta
ttagaaactcaaacctcagggtacatctcagtagccatggcagtagTATAACCAAAAACC
ACTAACATACCCCCCAAATAAATCAAAAACACCATTAAACCTAAAAAAgacccaccaaaa
ttcaatacaatgccacaaccaactccaccacttacaatcaacccaagtccaccataaata
ggagagggtttagaagaaaaaccaacaaacccaataacaaaaatagtacttaaaataaat
gcaatatatattgtcattattctcacatggaatctaaccacgaccaatgacatgaaaaat
catcgttgtacttcaactacaagaaccttAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGgcagcaatccccatagcttcctcactaaaaaaccctgaatcacccgtatcataaatt
actcaatccccaagcccattaaacttaaaaataatttctacttcctcttccttcaatgca
taataaaccatacaaaactccattattaaaccagaaacaaatgctccaaaaacagtctta
ttagaaactcaaacctcagggtacatctcagtagccatggcagtagTATAACCAAAAACC
ACTAACATACCCCCCAAATAAATCAAAAACACCATTAAACCTAAAAAAgacccaccaaaa
ttcaatacaatgccacaaccaactccaccacttacaatcaacccaagtccaccataaata
ggagagggtttagaagaaaaaccaacaaacccaataacaaaaatagtacttaaaataaat
gcaatatatattgtcattattctcacatggaatctaaccacgaccaatgacatgaaaaat
catcgttgtacttcaactacaagaaccttAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5835874|ref|NP_008645.1|ND6_15069

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5835874|ref|NP_008645.1|ND6_15069

ncRNA annotation: 2 entry(ies)

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               506-438, RF00005;tRNA; (AF486863.1/14093-14025), blast E-value=3e-32
               

               
               506-438, , RaveNnA Score=44.51

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               506-438, RF00005;tRNA; (AF486863.1/14093-14025), blast E-value=3e-32
               

               
               506-438, , RaveNnA Score=44.51

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	506-438, RF00005;tRNA; (AF486863.1/14093-14025), blast E-value=3e-32
	506-438, , RaveNnA Score=44.51