Non-Coding RNA Search

rcov08b_g20.y1

Sequence:


               
               TTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCACCCGCCCCGGCCGGCCG
CTCAGAGCCAGCCCTCGCCACCTCTTCACAGCGCCCTCGGACCGCCCCAAGGCCACCGCC
ACCGCTCCCGCGCCGCTGACGCCACCACCGCTCCTCAGCCTCCCGCCATGACGACCTCGT
GCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCAACCGCCAGA
TCAACCTGGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATTTTGACCGCG
ATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGG
AACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGG
ATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGGAATGTGCGC
TGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTGACA
AAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATGAGCAGGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCACCCGCCCCGGCCGGCCG
CTCAGAGCCAGCCCTCGCCACCTCTTCACAGCGCCCTCGGACCGCCCCAAGGCCACCGCC
ACCGCTCCCGCGCCGCTGACGCCACCACCGCTCCTCAGCCTCCCGCCATGACGACCTCGT
GCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCAACCGCCAGA
TCAACCTGGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATTTTGACCGCG
ATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGAGGG
AACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTCAGG
ATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGGAATGTGCGC
TGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTGACA
AAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATGAGCAGGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47125326|gb|AAH70494.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47125326|gb|AAH70494.1|

ncRNA annotation: 1 entry(ies)

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               1-30, , RaveNnA Score=35.45

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1-30, , RaveNnA Score=35.45

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-127, gnl|bosTau2|chr3 (5120738-5120609)
               

               
               1-127, gnl|Hg17|chr11 (77123897-77123744)
               

               
               1-127, gnl|Mm7|chr19 (9662856-9662987)
               


               
               190-597, gnl|bosTau2|chr10 (49576519-49576929)
               

               
               190-597, gnl|Hg17|chr7 (45810900-45810497)
               

               
               190-597, gnl|Mm7|chr4 (124948945-124949352)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-127, gnl|bosTau2|chr3 (5120738-5120609)
               

               
               1-127, gnl|Hg17|chr11 (77123897-77123744)
               

               
               1-127, gnl|Mm7|chr19 (9662856-9662987)
               


               
               190-597, gnl|bosTau2|chr10 (49576519-49576929)
               

               
               190-597, gnl|Hg17|chr7 (45810900-45810497)
               

               
               190-597, gnl|Mm7|chr4 (124948945-124949352)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	1-127, gnl\|bosTau2\|chr3 (5120738-5120609)
	1-127, gnl\|Hg17\|chr11 (77123897-77123744)
	1-127, gnl\|Mm7\|chr19 (9662856-9662987)

	190-597, gnl\|bosTau2\|chr10 (49576519-49576929)
	190-597, gnl\|Hg17\|chr7 (45810900-45810497)
	190-597, gnl\|Mm7\|chr4 (124948945-124949352)