Ss1.1-rpliv0133_a11.5
|
CAAAACCTCATGGTTCCTAGTTAGATTTCGTTTCCCCTGTGCCAGGACCAGAACTCTGCC
AGCTAGTTTTAATTAATAGTTTCGGTTTTAGGCATTAACTTCCAATCTGAAGGAGAAAAT
GATTTCATTTTCCTCCTTTTACTAACTCTGACAGGCATGCATGCTTCCCTTCTTCCATCC
TACCAACTGTATTTTATAATTTTAGTCACAATTCAGAGTGTATATTATTATCCTATATTC
CATTCATAGTTGAACCATGCAGTACCTTTGCTGCTCAAAAGTGTGGTCAAGGGTCCAGCA
GCACTGTTCTCTGGGAGCTTGTGAAAATACAGTCTCTTGTCCCAGCCCAGAATTTGAATG
CAGTTTTCAAGGTTCCCAGCTGATCCCTGGGAACACTCAAGTATGATGTGATTATTTTTG
TTTTCCTTGGGGCTAATTATTTTTATTTGCTTAATTTTCTGAATATTTGGCACTAACTCA
GCCACAAATCATCAGTTGTCAAAATGTCCTTTCAGGGAGTTCCCTAGTGGTCCAATGGTT
AGGGTTCAGCACTTTCACCTCTGCAGCCCAGGTTCAAGCCTTGGTCTGGGAACTGAGATC
CCATATCAAGCTGCTGCATGCCATGGCCAAAAAAATACCAAAAAATATATATATCCTTTC
AAAAATTTTGTTCATTTACTCAGCCATTAAAAGGAAAGAAAGAATGGCAATTGCAGCAAC
ATGGATGGACCTAGAAATTATCATGCTAAGTAAAGTTAGACAATGAGACACCCACATCAC
ATGCTGTCACTTACATGTGGAATCTAAAAGCCACAGTGAACTTCTTCACAGAACAGATAC
TGACTCAGACTGAAAAACTTAAGGTTTCCAAATGAGACAGGTTTGGGGGTAGGGGGATGC
ACTGAGGGTTTGGGATGAAGTCCTGTGAAATTTGTTCGTGATGACTGTTGTACAACTATA
AATGTAATAAAATTCATTGAGTAAATTAAAAAAAATAAAATGCAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAAAACCTCATGGTTCCTAGTTAGATTTCGTTTCCCCTGTGCCAGGACCAGAACTCTGCC
AGCTAGTTTTAATTAATAGTTTCGGTTTTAGGCATTAACTTCCAATCTGAAGGAGAAAAT
GATTTCATTTTCCTCCTTTTACTAACTCTGACAGGCATGCATGCTTCCCTTCTTCCATCC
TACCAACTGTATTTTATAATTTTAGTCACAATTCAGAGTGTATATTATTATCCTATATTC
CATTCATAGTTGAACCATGCAGTACCTTTGCTGCTCAAAAGTGTGGTCAAGGGTCCAGCA
GCACTGTTCTCTGGGAGCTTGTGAAAATACAGTCTCTTGTCCCAGCCCAGAATTTGAATG
CAGTTTTCAAGGTTCCCAGCTGATCCCTGGGAACACTCAAGTATGATGTGATTATTTTTG
TTTTCCTTGGGGCTAATTATTTTTATTTGCTTAATTTTCTGAATATTTGGCACTAACTCA
GCCACAAATCATCAGTTGTCAAAATGTCCTTTCAGGGAGTTCCCTAGTGGTCCAATGGTT
AGGGTTCAGCACTTTCACCTCTGCAGCCCAGGTTCAAGCCTTGGTCTGGGAACTGAGATC
CCATATCAAGCTGCTGCATGCCATGGCCAAAAAAATACCAAAAAATATATATATCCTTTC
AAAAATTTTGTTCATTTACTCAGCCATTAAAAGGAAAGAAAGAATGGCAATTGCAGCAAC
ATGGATGGACCTAGAAATTATCATGCTAAGTAAAGTTAGACAATGAGACACCCACATCAC
ATGCTGTCACTTACATGTGGAATCTAAAAGCCACAGTGAACTTCTTCACAGAACAGATAC
TGACTCAGACTGAAAAACTTAAGGTTTCCAAATGAGACAGGTTTGGGGGTAGGGGGATGC
ACTGAGGGTTTGGGATGAAGTCCTGTGAAATTTGTTCGTGATGACTGTTGTACAACTATA
AATGTAATAAAATTCATTGAGTAAATTAAAAAAAATAAAATGCAAAAA
|
|
521-592, tRNA Pseudo, RaveNnA Score=26.8 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
521-592, tRNA Pseudo, RaveNnA Score=26.8 |
|
gul (0.355177) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
fce (0.271592) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
rec (0.17307) |
|
cut (0.169924) |
|
isp (0.150376) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ute (0.132784) |
|
kid (0.129735) |
|
ret (0.128733) |
|
bla (0.124347) |
|
tra (0.123092) |
|
spc (0.113366) |
|
jej (0.0989218) |
|
gul (0.355177) |
|
cte (0.29274) |
|
hyp (0.285673) |
|
fce (0.271592) |
|
cmu (0.186393) |
|
mgm (0.180343) |
|
sto (0.179824) |
|
rec (0.17307) |
|
cut (0.169924) |
|
isp (0.150376) |
|
liv (0.146284) |
|
spl (0.143184) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
ute (0.132784) |
|
kid (0.129735) |
|
ret (0.128733) |
|
bla (0.124347) |
|
tra (0.123092) |
|
spc (0.113366) |
|
jej (0.0989218) |
