Ss1.1-Pig4-TMW8037K22.5
|
GGAGGCAGGCTCAAGACCCTGCGGTGGAGCTGTGTCCTCGGTTCCGCCGGAGCTTCCCCG
TCGGCGCCATGTCGTTCTGCAGCTTCTTCGGGGGCGAGGTTTTCCAGAACCACTTTGAGC
CAGGTGTCTACGTGTGTGCCAAGTGTGGCTATGAGCTCTTCTCCAGCCACTCAAAGTACG
CGCACTCGTCCCCATGGCCGGCCTTCACCGAGACCATCCACGCTGACAGTGTGGCCAAGC
GTCCAGAGCACAATCGGCCTGGAGCCTTAAAGGTGTCCTGTGGCAGATGTGGCAACGGAC
TGGGCCATGAGTTCCTGAACGATGGCCCCAAGCGGGGACAGTCCCGCTTCTGAATATTCA
GCAGTTCCCTGAAGTTCATCCCTAAAGGCCAAGAATCATCTCCCTCCCAGGGACAGTAGG
CGGGCAGCCCACGCCCTTCCCACGTGAACACTGCTTGGTGGCCATGCTCTGGCCGGCCCA
TCATAGAAGTGGAACCCCAGCCATTCAGACTGAAATGTCAGGCAGGCTTCCGAGGCCTTG
GCTCTGAACAGGCTCCTTGGGAGAAGGAGAAGGCCCATCCTCGGCTGCCAGGGCGGGCCC
CGTGGGCCTGGCTGTCGGCTGGCACCAGGGTCTCAGGGAGTGGGAGCCAGGCCTGGCTCG
TCACCCCCACCTTCTCAGCCCATGGCCCCTCCATGCCTTGTCTGGACTTCACCCCGGCGG
GGCCCAGTTCTCAGATGGGCCCTGGCCTCAGCAAAGCTCTCACCCACCCCCCGCAGGCTG
TGCTGGGACAGAAGGTGAGCAGAGGCGGCCCAGCCGGCTGCTCCAGGGTCACTGTATGAT
ACACTCTGGCTAAACCCTTGCAGGCGGCCAGAGGGGTGATGGTCTGTGACTCCCGAGGGG
AGCAGGCGGAGGGGGCGGGTCTCTGGGCTCTGAGTTACGAAAGAGAAATCCCGGACCTTC
TGGCACAGTCTGTATGGGTGCTGCTCTCCCAGCTCAGGCTTAGGAAAGCAGCTCTTGCTC
CACCAGCCTGATCGGGCGCGGCCAGGGCCCGGAGCTCCCAGCCTCAGCTCGCGCCTTCTG
AGGAGAAGGTGCCCGTGCCTTACTGCGCATGCTCTGAGGCTCGTGCTGGCGGGGAGGGTG
GGTGAAGCCCCTCCTGCCTGAATGCCCTGTAATCGGGAGGCGATCAATACACAAATGGAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGGCAGGCTCAAGACCCTGCGGTGGAGCTGTGTCCTCGGTTCCGCCGGAGCTTCCCCG
TCGGCGCCATGTCGTTCTGCAGCTTCTTCGGGGGCGAGGTTTTCCAGAACCACTTTGAGC
CAGGTGTCTACGTGTGTGCCAAGTGTGGCTATGAGCTCTTCTCCAGCCACTCAAAGTACG
CGCACTCGTCCCCATGGCCGGCCTTCACCGAGACCATCCACGCTGACAGTGTGGCCAAGC
GTCCAGAGCACAATCGGCCTGGAGCCTTAAAGGTGTCCTGTGGCAGATGTGGCAACGGAC
TGGGCCATGAGTTCCTGAACGATGGCCCCAAGCGGGGACAGTCCCGCTTCTGAATATTCA
GCAGTTCCCTGAAGTTCATCCCTAAAGGCCAAGAATCATCTCCCTCCCAGGGACAGTAGG
CGGGCAGCCCACGCCCTTCCCACGTGAACACTGCTTGGTGGCCATGCTCTGGCCGGCCCA
TCATAGAAGTGGAACCCCAGCCATTCAGACTGAAATGTCAGGCAGGCTTCCGAGGCCTTG
GCTCTGAACAGGCTCCTTGGGAGAAGGAGAAGGCCCATCCTCGGCTGCCAGGGCGGGCCC
CGTGGGCCTGGCTGTCGGCTGGCACCAGGGTCTCAGGGAGTGGGAGCCAGGCCTGGCTCG
TCACCCCCACCTTCTCAGCCCATGGCCCCTCCATGCCTTGTCTGGACTTCACCCCGGCGG
GGCCCAGTTCTCAGATGGGCCCTGGCCTCAGCAAAGCTCTCACCCACCCCCCGCAGGCTG
TGCTGGGACAGAAGGTGAGCAGAGGCGGCCCAGCCGGCTGCTCCAGGGTCACTGTATGAT
ACACTCTGGCTAAACCCTTGCAGGCGGCCAGAGGGGTGATGGTCTGTGACTCCCGAGGGG
AGCAGGCGGAGGGGGCGGGTCTCTGGGCTCTGAGTTACGAAAGAGAAATCCCGGACCTTC
TGGCACAGTCTGTATGGGTGCTGCTCTCCCAGCTCAGGCTTAGGAAAGCAGCTCTTGCTC
CACCAGCCTGATCGGGCGCGGCCAGGGCCCGGAGCTCCCAGCCTCAGCTCGCGCCTTCTG
AGGAGAAGGTGCCCGTGCCTTACTGCGCATGCTCTGAGGCTCGTGCTGGCGGGGAGGGTG
GGTGAAGCCCCTCCTGCCTGAATGCCCTGTAATCGGGAGGCGATCAATACACAAATGGAA |
|
gi|12643828|sp|Q9NZV6|MSRX_HUMAN |
Protein identifier
|
gi|12643828|sp|Q9NZV6|MSRX_HUMAN |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
828-890, , RaveNnA Score=34.55 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
828-890, , RaveNnA Score=34.55 |
|
120-286, gnl|bosTau2|chr25 (3095203-3095369) |
|
120-286, gnl|canFam2|chr6 (42024777-42024612) |
|
120-286, gnl|danRer3|chr3 (9504873-9505031) |
|
120-286, gnl|echTel1|scaffold_320089 (83779-83630) |
|
120-286, gnl|fr1|chrUn (144196907-144196741) |
|
120-286, gnl|galGal2|chr14 (8161711-8161870) |
|
120-286, gnl|hg17|chr16 (1931245-1931421) |
|
120-286, gnl|Hg17|chr16 (1931411-1931245) |
|
120-286, gnl|loxAfr1|scaffold_114531 (751-587) |
|
120-286, gnl|mm7|chr17 (22921981-22921817) |
|
120-286, gnl|Mm7|chr17 (22921825-22921993) |
|
120-286, gnl|panTro1|chr18_random (6681877-6681713) |
|
120-286, gnl|rheMac2|chr20 (1927514-1927678) |
|
120-286, gnl|rn3|chr10 (13995713-13995549) |
|
120-286, gnl|tetNig1|chr3 (9052453-9052291) |
| |
|
510-1142, gnl|bosTau2|chr25 (3096923-3097573) |
|
510-1142, gnl|Hg17|chr16 (1929002-1928320) |
|
510-1142, gnl|Mm7|chr17 (22924368-22925025) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
120-286, gnl|bosTau2|chr25 (3095203-3095369) |
|
120-286, gnl|canFam2|chr6 (42024777-42024612) |
|
120-286, gnl|danRer3|chr3 (9504873-9505031) |
|
120-286, gnl|echTel1|scaffold_320089 (83779-83630) |
|
120-286, gnl|fr1|chrUn (144196907-144196741) |
|
120-286, gnl|galGal2|chr14 (8161711-8161870) |
|
120-286, gnl|hg17|chr16 (1931245-1931421) |
|
120-286, gnl|Hg17|chr16 (1931411-1931245) |
|
120-286, gnl|loxAfr1|scaffold_114531 (751-587) |
|
120-286, gnl|mm7|chr17 (22921981-22921817) |
|
120-286, gnl|Mm7|chr17 (22921825-22921993) |
|
120-286, gnl|panTro1|chr18_random (6681877-6681713) |
|
120-286, gnl|rheMac2|chr20 (1927514-1927678) |
|
120-286, gnl|rn3|chr10 (13995713-13995549) |
|
120-286, gnl|tetNig1|chr3 (9052453-9052291) |
| |
|
510-1142, gnl|bosTau2|chr25 (3096923-3097573) |
|
510-1142, gnl|Hg17|chr16 (1929002-1928320) |
|
510-1142, gnl|Mm7|chr17 (22924368-22925025) |
|
pla (0.401016) |
|
nje (0.33184) |
|
cga (0.279096) |
|
cov (0.264306) |
|
jca (0.22792) |
|
fty (0.17584) |
|
ton (0.1755) |
|
duo (0.172801) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
ese (0.126502) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
pla (0.401016) |
|
nje (0.33184) |
|
cga (0.279096) |
|
cov (0.264306) |
|
jca (0.22792) |
|
fty (0.17584) |
|
ton (0.1755) |
|
duo (0.172801) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
hlv (0.139256) |
|
ese (0.126502) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
nbm (0.0993246) |
