Ss1.1-Utr1-UTR010024B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGACTGGAAAAATACCTGTGACGGATGAAGAGCAGACTAATGTGCCTTATGTCTATG CCATTGGTGATATATTGGAGGGGAAGCCAGAGCTCACCCCGGTAGCAATCCAGGCAGGAA GGTTGCTGGCACAGAGGCTGTATGGTGGCTCCACTGTCAAGTGTGACTATGAAAACGTTC CAACGACCGTTTTTACTCCTTTGGAATATGGTGCTTGTGGTCTTTCCGAAGAGAAGGCTG TGGAGAAATTTGGGGAAGAAAATATTGAGATTTACCATAGTTACTTTTGGCCGTTGGAAT GGACGATTCCATCAAGAGATAACAACAAATGTTATGCAAAAATAGTCTGCAATATCAAAG ACAATGAGCGTGTTGTGGGCTTCCACATACTGGGTCCCAATGCTGGAGAGGTTACCCAGG GCTTCGCAGCGGCGCTCAAGTGCGGACTGACCAAGGACCAGCTGGACAGCACCATCGGGA TCCACCCCGTCTGTGCAGAGGTGTTCACGACCCTGTCGGTGACCAAGCGCTCAGGGGGAA ACATCCTCCAGGCCGGTTGCTGAGGTTAAACCCCAGTGTGGATGCTGCTGCCAAGACTCC AAACCACTGTGTGTGTCTTGCCCAAACCCAAGGCGAAGTTTACAGAATGCTCTCAGGCTT CGGCACCTGCGTGTCCCGTGCTTACACCACCCGAGGCCCCCTTGGATGTCATGGGTGGGA CATGCTGTGTGGAAGGCAGGCAGCATCACACTGGGGTCACCGTGACGGACTCAAAACTGA CGTTCGACAGAGCACTGGAGTTGCATCCATGAAGTCACCAGCCTCAAGCCCCCGCGGTGG GCGGTGATGGAACCGTCGAAGCAGTTTTTAGCATGGCCTTTCTTTTGTAGGTTTTCTTAT TCTCACCGTCAAGCTTTCTATGTTGGTTACTTTTTTTTTTTTTTCCTCCAAGGTGTTAAT GGTACTAGAGATGAAAAATATAAGCAGTCAATTTTTATCCAAAAGCAAGTGGTGGCTACC GCGTGCAAATAAGGCGGCCCATCACTGGGACGGCACGGGGTGGCTCAGGCTCGGCCCAGG AGGGAGCTGCCCCTGGGCCCAGACGTGCTGTTCCGCTTGGCCGGCCGGCTCAGCAGCGTC TGCCCAGGAAGCCATGTGGCCCGAACAAGTCAAGTTAGGGCTGACCAGCTTCCCCCCCAT GCACCACACCACTGATGATTATTTCTAATTCTGTTTTGAAAAGAAAATAGCTCCTGGGCC AGGCTCTGTGAAGGGCTGTTCCGCCTCCGGAGCTTGGTCATATAGTGTGAGTTCCACCGC TCTTCGTCACGGAGGCAGATGTACACCTGAAATGGGGAAAAAACAATAAATGTGTTTGTT TAGTCCGTTGTGTGCTGGTCTAAGTGAGCTGAGATCTTTTGCAATGGAAAACACTTAACA CTCGTTTAGAACTTTGGGAGGAGGTAGCTTTTGCTTTAAGCTAAAATCACAAGATATCAC AGCTTTATGTTGCCTGTGTGTTACATGTCTGTCTTCCTAAAAGAACTACACTTATAGGAA AAAAAAGTCTTTCCACACTTACCAATTTAACTCTTTTGTGATATTTGCTTTTTTTTTTTC CCCCAAGGAAGCTATTATCATAATTTATTATTTTTGAACACAGGTGGATGTGAAGGATTT TCATTTAAAAACCAAATGGTTTTGACTTTTTCTGTTGAATGAATGACTGTACTTGGTGGA GTTTGGGCAGAAAGGTGTGTGCTTGCTCAGCATCTCCCAATTCCTCGTGTTACCACAAGG AGGTGTTAACTCTGCAGTTAGGAAATTTCTGGCTAAATGTACTGACTACAGGTTGTCTGT AGGCCATGTCCTCACCGTACAAGCTGGATTTTGACAGTTAGGAAATTTCTGGCTAAATGT ACTGACTACAGGTTGTCTGTAGGCCATGTCCTCACCGTACAAGCTGGATTTTGAACATGC CGTGGCTATCAGGCCCCCCACCAGCAGTTCTTGTAGCTCCTTTCTCTTTCCCTCCCCCTC TGTGTGTGTCTCGGCTCAACACGAAGTGGTTGATTCAAAGTACATTTCTCGGTCATCTCA GGGCACTCTCGGTCTCGGGGTCAGCAGAGCCCCTGACCTGGTCTGTCCCACTCACAGGCT GCCCCGCGCCGCCGCCCGCCTGGCTGGGGAGATCTCAAGTGGGAGAAGGAAACGAAGAGG GGAGTTGGGGCAGCGGACGCTGTTCAGTTTTATTTATTTTGTCATTTGTCTCAGACATGA GAACACAGGCAGTGCAAGGTGATCGCGCCGAATCATGTGATTCTGTCTTTGTGGAATGGA CGATCCTGCCCCCCCACAGGAAGGATGACACTGTATAGACTTGTCTCTGTAATTGTCCAA TGTATTGAAACTCACATTCAGTTCCATGTATTTTTGTTATAAACCTTCTGAAAAAAAAAA AAACAAAAAAACCCAATGTGAAACATTAAAAGGTATTACTGTCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGACTGGAAAAATACCTGTGACGGATGAAGAGCAGACTAATGTGCCTTATGTCTATG CCATTGGTGATATATTGGAGGGGAAGCCAGAGCTCACCCCGGTAGCAATCCAGGCAGGAA GGTTGCTGGCACAGAGGCTGTATGGTGGCTCCACTGTCAAGTGTGACTATGAAAACGTTC CAACGACCGTTTTTACTCCTTTGGAATATGGTGCTTGTGGTCTTTCCGAAGAGAAGGCTG TGGAGAAATTTGGGGAAGAAAATATTGAGATTTACCATAGTTACTTTTGGCCGTTGGAAT GGACGATTCCATCAAGAGATAACAACAAATGTTATGCAAAAATAGTCTGCAATATCAAAG ACAATGAGCGTGTTGTGGGCTTCCACATACTGGGTCCCAATGCTGGAGAGGTTACCCAGG GCTTCGCAGCGGCGCTCAAGTGCGGACTGACCAAGGACCAGCTGGACAGCACCATCGGGA TCCACCCCGTCTGTGCAGAGGTGTTCACGACCCTGTCGGTGACCAAGCGCTCAGGGGGAA ACATCCTCCAGGCCGGTTGCTGAGGTTAAACCCCAGTGTGGATGCTGCTGCCAAGACTCC AAACCACTGTGTGTGTCTTGCCCAAACCCAAGGCGAAGTTTACAGAATGCTCTCAGGCTT CGGCACCTGCGTGTCCCGTGCTTACACCACCCGAGGCCCCCTTGGATGTCATGGGTGGGA CATGCTGTGTGGAAGGCAGGCAGCATCACACTGGGGTCACCGTGACGGACTCAAAACTGA CGTTCGACAGAGCACTGGAGTTGCATCCATGAAGTCACCAGCCTCAAGCCCCCGCGGTGG GCGGTGATGGAACCGTCGAAGCAGTTTTTAGCATGGCCTTTCTTTTGTAGGTTTTCTTAT TCTCACCGTCAAGCTTTCTATGTTGGTTACTTTTTTTTTTTTTTCCTCCAAGGTGTTAAT GGTACTAGAGATGAAAAATATAAGCAGTCAATTTTTATCCAAAAGCAAGTGGTGGCTACC GCGTGCAAATAAGGCGGCCCATCACTGGGACGGCACGGGGTGGCTCAGGCTCGGCCCAGG AGGGAGCTGCCCCTGGGCCCAGACGTGCTGTTCCGCTTGGCCGGCCGGCTCAGCAGCGTC TGCCCAGGAAGCCATGTGGCCCGAACAAGTCAAGTTAGGGCTGACCAGCTTCCCCCCCAT GCACCACACCACTGATGATTATTTCTAATTCTGTTTTGAAAAGAAAATAGCTCCTGGGCC AGGCTCTGTGAAGGGCTGTTCCGCCTCCGGAGCTTGGTCATATAGTGTGAGTTCCACCGC TCTTCGTCACGGAGGCAGATGTACACCTGAAATGGGGAAAAAACAATAAATGTGTTTGTT TAGTCCGTTGTGTGCTGGTCTAAGTGAGCTGAGATCTTTTGCAATGGAAAACACTTAACA CTCGTTTAGAACTTTGGGAGGAGGTAGCTTTTGCTTTAAGCTAAAATCACAAGATATCAC AGCTTTATGTTGCCTGTGTGTTACATGTCTGTCTTCCTAAAAGAACTACACTTATAGGAA AAAAAAGTCTTTCCACACTTACCAATTTAACTCTTTTGTGATATTTGCTTTTTTTTTTTC CCCCAAGGAAGCTATTATCATAATTTATTATTTTTGAACACAGGTGGATGTGAAGGATTT TCATTTAAAAACCAAATGGTTTTGACTTTTTCTGTTGAATGAATGACTGTACTTGGTGGA GTTTGGGCAGAAAGGTGTGTGCTTGCTCAGCATCTCCCAATTCCTCGTGTTACCACAAGG AGGTGTTAACTCTGCAGTTAGGAAATTTCTGGCTAAATGTACTGACTACAGGTTGTCTGT AGGCCATGTCCTCACCGTACAAGCTGGATTTTGACAGTTAGGAAATTTCTGGCTAAATGT ACTGACTACAGGTTGTCTGTAGGCCATGTCCTCACCGTACAAGCTGGATTTTGAACATGC CGTGGCTATCAGGCCCCCCACCAGCAGTTCTTGTAGCTCCTTTCTCTTTCCCTCCCCCTC TGTGTGTGTCTCGGCTCAACACGAAGTGGTTGATTCAAAGTACATTTCTCGGTCATCTCA GGGCACTCTCGGTCTCGGGGTCAGCAGAGCCCCTGACCTGGTCTGTCCCACTCACAGGCT GCCCCGCGCCGCCGCCCGCCTGGCTGGGGAGATCTCAAGTGGGAGAAGGAAACGAAGAGG GGAGTTGGGGCAGCGGACGCTGTTCAGTTTTATTTATTTTGTCATTTGTCTCAGACATGA GAACACAGGCAGTGCAAGGTGATCGCGCCGAATCATGTGATTCTGTCTTTGTGGAATGGA CGATCCTGCCCCCCCACAGGAAGGATGACACTGTATAGACTTGTCTCTGTAATTGTCCAA TGTATTGAAACTCACATTCAGTTCCATGTATTTTTGTTATAAACCTTCTGAAAAAAAAAA AAACAAAAAAACCCAATGTGAAACATTAAAAGGTATTACTGTCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 768-881, - strand, RNAz p=0.965411 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 768-881, - strand, RNAz p=0.965411 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 800-865, , RaveNnA Score=19.14 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 5-161, gnl|bosTau2|chr2 (19662836-19662680) | |
| 5-161, gnl|canFam2|chr10 (37055264-37055074) | |
| 5-161, gnl|danRer3|chrNA (185515034-185515205) | |
| 5-161, gnl|echTel1|scaffold_179661 (10215-10025) | |
| 5-161, gnl|fr1|chrUn (102116275-102116102) | |
| 5-161, gnl|galGal2|chr1 (51303161-51302978) | |
| 5-161, gnl|hg17|chr12 (103223751-103223943) | |
| 5-161, gnl|Hg17|chr12 (103223760-103223916) | |
| 5-161, gnl|loxAfr1|scaffold_13754 (47157-46965) | |
| 5-161, gnl|mm7|chr10 (82426444-82426630) | |
| 5-161, gnl|Mm7|chr10 (82426448-82426604) | |
| 5-161, gnl|monDom2|scaffold_34 (8917913-8917722) | |
| 5-161, gnl|oryCun1|scaffold_202308 (85712-85520) | |
| 5-161, gnl|panTro1|chr10 (105700771-105700963) | |
| 5-161, gnl|rheMac2|chr2 (46385136-46384957) | |
| 5-161, gnl|rn3|chr7 (23087698-23087523) | |
| 5-161, gnl|tetNig1|chr11 (10335352-10335189) | |
| 5-161, gnl|xenTro1|scaffold_434 (445902-446090) | |
| 499-1101, gnl|bosTau2|chr2 (19643118-19642521) | |
| 499-1101, gnl|Hg17|chr12 (103244596-103245260) | |
| 499-1101, gnl|Mm7|chr10 (82437481-82438090) | |
| 1160-1892, gnl|bosTau2|chr2 (19642511-19641807) | |
| 1160-1892, gnl|Hg17|chr12 (103245270-103245958) | |
| 1895-2258, gnl|bosTau2|chr2 (19641883-19641518) | |
| 1895-2258, gnl|canFam2|chr10 (37029445-37029151) | |
| 1895-2258, gnl|dasNov1|scaffold_194293 (2729-3038) | |
| 1895-2258, gnl|echTel1|scaffold_256466 (4366-4120) | |
| 1895-2258, gnl|hg17|chr12 (103245830-103246154) | |
| 1895-2258, gnl|Hg17|chr12 (103245884-103246247) | |
| 1895-2258, gnl|loxAfr1|scaffold_59497 (6632-6306) | |
| 1895-2258, gnl|mm7|chr10 (82438608-82438877) | |
| 1895-2258, gnl|Mm7|chr10 (82438648-82438970) | |
| 1895-2258, gnl|monDom2|scaffold_34 (8903558-8903253) | |
| 1895-2258, gnl|oryCun1|scaffold_175603 (53822-53530) | |
| 1895-2258, gnl|panTro1|chr10 (105723006-105723330) | |
| 1895-2258, gnl|rn3|chr7 (23076424-23076144) | |
| 2271-2503, gnl|bosTau2|chr2 (19641475-19641249) | |
| 2271-2503, gnl|canFam2|chr10 (37028768-37029089) | |
| 2271-2503, gnl|canFam2|chr10 (37029150-37028749) | |
| 2271-2503, gnl|dasNov1|scaffold_194293 (3039-3427) | |
| 2271-2503, gnl|dasNov1|scaffold_85428 (5616-5308) | |
| 2271-2503, gnl|echTel1|scaffold_256466 (3757-4046) | |
| 2271-2503, gnl|echTel1|scaffold_256466 (4119-3747) | |
| 2271-2503, gnl|hg17|chr12 (103246155-103246546) | |
| 2271-2503, gnl|Hg17|chr12 (103246285-103246528) | |
| 2271-2503, gnl|hg17|chr3 (14666280-14666593) | |
| 2271-2503, gnl|loxAfr1|scaffold_59497 (5974-6253) | |
| 2271-2503, gnl|loxAfr1|scaffold_59497 (6305-5955) | |
| 2271-2503, gnl|mm7|chr10 (82438878-82439231) | |
| 2271-2503, gnl|Mm7|chr10 (82439010-82439216) | |
| 2271-2503, gnl|mm7|chrX (100170238-100170525) | |
| 2271-2503, gnl|monDom2|scaffold_34 (8903252-8902852) | |
| 2271-2503, gnl|oryCun1|scaffold_175603 (53529-53157) | |
| 2271-2503, gnl|oryCun1|scaffold_191633 (17219-16909) | |
| 2271-2503, gnl|panTro1|chr10 (105723331-105723721) | |
| 2271-2503, gnl|panTro1|chr2 (15265494-15265806) | |
| 2271-2503, gnl|rheMac2|chr11 (84338281-84338589) | |
| 2271-2503, gnl|rheMac2|chr11 (84338642-84338286) | |
| 2271-2503, gnl|rn3|chr7 (23076143-23075807) | |
| 2271-2503, gnl|rn3|chrX (93034118-93033838) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-161, gnl|bosTau2|chr2 (19662836-19662680) | |
| 5-161, gnl|canFam2|chr10 (37055264-37055074) | |
| 5-161, gnl|danRer3|chrNA (185515034-185515205) | |
| 5-161, gnl|echTel1|scaffold_179661 (10215-10025) | |
| 5-161, gnl|fr1|chrUn (102116275-102116102) | |
| 5-161, gnl|galGal2|chr1 (51303161-51302978) | |
| 5-161, gnl|hg17|chr12 (103223751-103223943) | |
| 5-161, gnl|Hg17|chr12 (103223760-103223916) | |
| 5-161, gnl|loxAfr1|scaffold_13754 (47157-46965) | |
| 5-161, gnl|mm7|chr10 (82426444-82426630) | |
| 5-161, gnl|Mm7|chr10 (82426448-82426604) | |
| 5-161, gnl|monDom2|scaffold_34 (8917913-8917722) | |
| 5-161, gnl|oryCun1|scaffold_202308 (85712-85520) | |
| 5-161, gnl|panTro1|chr10 (105700771-105700963) | |
| 5-161, gnl|rheMac2|chr2 (46385136-46384957) | |
| 5-161, gnl|rn3|chr7 (23087698-23087523) | |
| 5-161, gnl|tetNig1|chr11 (10335352-10335189) | |
| 5-161, gnl|xenTro1|scaffold_434 (445902-446090) | |
| 499-1101, gnl|bosTau2|chr2 (19643118-19642521) | |
| 499-1101, gnl|Hg17|chr12 (103244596-103245260) | |
| 499-1101, gnl|Mm7|chr10 (82437481-82438090) | |
| 1160-1892, gnl|bosTau2|chr2 (19642511-19641807) | |
| 1160-1892, gnl|Hg17|chr12 (103245270-103245958) | |
| 1895-2258, gnl|bosTau2|chr2 (19641883-19641518) | |
| 1895-2258, gnl|canFam2|chr10 (37029445-37029151) | |
| 1895-2258, gnl|dasNov1|scaffold_194293 (2729-3038) | |
| 1895-2258, gnl|echTel1|scaffold_256466 (4366-4120) | |
| 1895-2258, gnl|hg17|chr12 (103245830-103246154) | |
| 1895-2258, gnl|Hg17|chr12 (103245884-103246247) | |
| 1895-2258, gnl|loxAfr1|scaffold_59497 (6632-6306) | |
| 1895-2258, gnl|mm7|chr10 (82438608-82438877) | |
| 1895-2258, gnl|Mm7|chr10 (82438648-82438970) | |
| 1895-2258, gnl|monDom2|scaffold_34 (8903558-8903253) | |
| 1895-2258, gnl|oryCun1|scaffold_175603 (53822-53530) | |
| 1895-2258, gnl|panTro1|chr10 (105723006-105723330) | |
| 1895-2258, gnl|rn3|chr7 (23076424-23076144) | |
| 2271-2503, gnl|bosTau2|chr2 (19641475-19641249) | |
| 2271-2503, gnl|canFam2|chr10 (37028768-37029089) | |
| 2271-2503, gnl|canFam2|chr10 (37029150-37028749) | |
| 2271-2503, gnl|dasNov1|scaffold_194293 (3039-3427) | |
| 2271-2503, gnl|dasNov1|scaffold_85428 (5616-5308) | |
| 2271-2503, gnl|echTel1|scaffold_256466 (3757-4046) | |
| 2271-2503, gnl|echTel1|scaffold_256466 (4119-3747) | |
| 2271-2503, gnl|hg17|chr12 (103246155-103246546) | |
| 2271-2503, gnl|Hg17|chr12 (103246285-103246528) | |
| 2271-2503, gnl|hg17|chr3 (14666280-14666593) | |
| 2271-2503, gnl|loxAfr1|scaffold_59497 (5974-6253) | |
| 2271-2503, gnl|loxAfr1|scaffold_59497 (6305-5955) | |
| 2271-2503, gnl|mm7|chr10 (82438878-82439231) | |
| 2271-2503, gnl|Mm7|chr10 (82439010-82439216) | |
| 2271-2503, gnl|mm7|chrX (100170238-100170525) | |
| 2271-2503, gnl|monDom2|scaffold_34 (8903252-8902852) | |
| 2271-2503, gnl|oryCun1|scaffold_175603 (53529-53157) | |
| 2271-2503, gnl|oryCun1|scaffold_191633 (17219-16909) | |
| 2271-2503, gnl|panTro1|chr10 (105723331-105723721) | |
| 2271-2503, gnl|panTro1|chr2 (15265494-15265806) | |
| 2271-2503, gnl|rheMac2|chr11 (84338281-84338589) | |
| 2271-2503, gnl|rheMac2|chr11 (84338642-84338286) | |
| 2271-2503, gnl|rn3|chr7 (23076143-23075807) | |
| 2271-2503, gnl|rn3|chrX (93034118-93033838) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| duo (0.691204) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| cov (0.264306) | |
| cty (0.20816) | |
| tes (0.207814) | |
| jej (0.197844) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.691204) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| cov (0.264306) | |
| cty (0.20816) | |
| tes (0.207814) | |
| jej (0.197844) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| sin (0.174948) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| ldo (0.0970026) |