Non-Coding RNA Search

Ss1.1-4civ-UMC-p4civv1-001-g10.3.5

Sequence:


               
               CTTACGTCCTTGTTACCTTCTTATTTGACATACATTACTTATGCATCCCTATTCCATTGC
------------GTGTGCGGGCTTCATGATTCGGCTCAGGTCTTGGAGCGAGCCGTTCTA
CTTTGGCTGGTTGCGGGGGCAGGATTTGAACCTGCGACCTTCGGGTTATGAGCCCGACGA
GCTGCCAGACTGCTCCACCCCGCGTCCGTAGAAACGCATTCGACTTTCTGGCTGGTTGCG
GGGGCAGGATTTGAACCTGCGACCTTCGGGTTATGAGCCCGACGAGCTGCCAGACTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACGTCCTTGTTACCTTCTTATTTGACATACATTACTTATGCATCCCTATTCCATTGC
------------GTGTGCGGGCTTCATGATTCGGCTCAGGTCTTGGAGCGAGCCGTTCTA
CTTTGGCTGGTTGCGGGGGCAGGATTTGAACCTGCGACCTTCGGGTTATGAGCCCGACGA
GCTGCCAGACTGCTCCACCCCGCGTCCGTAGAAACGCATTCGACTTTCTGGCTGGTTGCG
GGGGCAGGATTTGAACCTGCGACCTTCGGGTTATGAGCCCGACGAGCTGCCAGACTGCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|53692715|ref|ZP_00347405.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53692715|ref|ZP_00347405.1|

ncRNA annotation: 2 entry(ies)

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               121-191, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=9e-34
               

               
               204-131, , RaveNnA Score=67.16

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               121-191, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=9e-34
               

               
               204-131, , RaveNnA Score=67.16

	121-191, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=9e-34
	204-131, , RaveNnA Score=67.16