Non-Coding RNA Search

Ss1.1-rdbla0117_b23.5

Sequence:


               
               TCGGTGGAGAAAGATGACCACACGTCCAGCCTCACCAGCATCCCCGTCTGCTGGTGGTGG
GCCACCATCAGCATGACGACCGTGGGCTACGGAGACACCCACCCCGTCACCTTGCCCGGA
AAGCTCATCGCCAGCACGTGCATCATCTGTGGCATCTTGGTGGTGGCCCTTCCCATCACC
ATTATCTTCAACAAGTTCTCCAAGTACTACCAGAAGCAGAAGGACATTGACGTGGACCAG
TGCGGTGAGGACCCACCAGAGAAGTGCCAGGAGCTCCCTTACTTTAACATCAGGGACATC
TATGCCCAGCGGATGCACGCCTTCATCACCAGTCTCTCTTCGGTGGGAATTGTGGTGAGC
GACCCCGATTCCACAGATGCTTCGAGCATTGAAGACAACGAGGATGTTTATAACATAGCA
TCCCTGGAGAATGGCACAGCAAAATAAGCGGGGATGGTCGTGCCTGTATCTTGTGTCCCT
TCCCGATCTTAGGTTAACACAGCTTTAGAAACCTCAATGGGTTCGTTCAAAATCATTTAA
TTCTCAGGGTGTACTCTTCAGCCATAGTTGGACATTTCATTGCTCTGAAATGCTAGAAAT
GTCTTTATTTTTCTCAGTGAGGCCCATTAAATGCCTTGCTCTGAAAGTTATTTTTTACCA
GAGAGGATTGTGATATGATTTTGGAAAAAAAAAAAAAAAAGGGTAAATGGTAGTGGGTGG
GATGTGTTGCTATGGCTTCTGTATCATTCTGTGTTTATCATTTACTCACATTGAGCTAAC
TGTAAATTACTGGCAAATAGAAGCAAGGGCCCCGAAGACTACATGCATGTAAGTAAGATC
CACATGAGACAATGCATGTAAATCCATGTTCACATCCTTGACATGGAAATTAGGAGCCTA
ATAAACTGCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGTGGAGAAAGATGACCACACGTCCAGCCTCACCAGCATCCCCGTCTGCTGGTGGTGG
GCCACCATCAGCATGACGACCGTGGGCTACGGAGACACCCACCCCGTCACCTTGCCCGGA
AAGCTCATCGCCAGCACGTGCATCATCTGTGGCATCTTGGTGGTGGCCCTTCCCATCACC
ATTATCTTCAACAAGTTCTCCAAGTACTACCAGAAGCAGAAGGACATTGACGTGGACCAG
TGCGGTGAGGACCCACCAGAGAAGTGCCAGGAGCTCCCTTACTTTAACATCAGGGACATC
TATGCCCAGCGGATGCACGCCTTCATCACCAGTCTCTCTTCGGTGGGAATTGTGGTGAGC
GACCCCGATTCCACAGATGCTTCGAGCATTGAAGACAACGAGGATGTTTATAACATAGCA
TCCCTGGAGAATGGCACAGCAAAATAAGCGGGGATGGTCGTGCCTGTATCTTGTGTCCCT
TCCCGATCTTAGGTTAACACAGCTTTAGAAACCTCAATGGGTTCGTTCAAAATCATTTAA
TTCTCAGGGTGTACTCTTCAGCCATAGTTGGACATTTCATTGCTCTGAAATGCTAGAAAT
GTCTTTATTTTTCTCAGTGAGGCCCATTAAATGCCTTGCTCTGAAAGTTATTTTTTACCA
GAGAGGATTGTGATATGATTTTGGAAAAAAAAAAAAAAAAGGGTAAATGGTAGTGGGTGG
GATGTGTTGCTATGGCTTCTGTATCATTCTGTGTTTATCATTTACTCACATTGAGCTAAC
TGTAAATTACTGGCAAATAGAAGCAAGGGCCCCGAAGACTACATGCATGTAAGTAAGATC
CACATGAGACAATGCATGTAAATCCATGTTCACATCCTTGACATGGAAATTAGGAGCCTA
ATAAACTGCCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5ISM9_MACFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ISM9_MACFA

ncRNA annotation: 1 entry(ies)

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               82-195, RF00485;K_chan_RES; (BC015947.2/1501-1614), RaveNnA Score=42.85

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               82-195, RF00485;K_chan_RES; (BC015947.2/1501-1614), RaveNnA Score=42.85

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               bla (0.248694)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)