Non-Coding RNA Search

rpigca_2218.y1

Sequence:


               
               GAGTGGGCAACAGTTTGAACCTGTTGTATATTGGGAGCTCAGTCTTTGGTTGGTCAGGCA
TAATGGAGGATCCTGGTGATGACCAATGACATTGTCAGCCAATCCCCACATGGGAATGAG
GACATGTCCTGCAATTCTGAAGGGATTCTCTTGCATATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGGGCAACAGTTTGAACCTGTTGTATATTGGGAGCTCAGTCTTTGGTTGGTCAGGCA
TAATGGAGGATCCTGGTGATGACCAATGACATTGTCAGCCAATCCCCACATGGGAATGAG
GACATGTCCTGCAATTCTGAAGGGATTCTCTTGCATATTCC

ncRNA annotation: 2 entry(ies)

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               69-147, RF00055;snoZ37; (AF146043.1/3911-3989), blast E-value=2e-36
               

               
               69-147, RF00055;snoZ37; (AF146043.1/3911-3989) : Z37 (gnl|combinedlit|LIT1528), 
RaveNnA Score=22.26

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               69-147, RF00055;snoZ37; (AF146043.1/3911-3989), blast E-value=2e-36
               

               
               69-147, RF00055;snoZ37; (AF146043.1/3911-3989) : Z37 (gnl|combinedlit|LIT1528), 
RaveNnA Score=22.26

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	69-147, RF00055;snoZ37; (AF146043.1/3911-3989), blast E-value=2e-36
	69-147, RF00055;snoZ37; (AF146043.1/3911-3989) : Z37 (gnl\|combinedlit\|LIT1528), RaveNnA Score=22.26