Non-Coding RNA Search

Ss1.1-Pig4-TMW8051I17.5

Sequence:


               
               GGGAGCATCGGGTTCTTTTTATTTACAACTCCTTATGCAAATTATATCTAGTGAATGCCT
AGGTCTGATTGGGAAATACTAGTAATGATGTCATTTTCAATGATATCCAATCAGAACGCG
CATCTACAGGAACTGTATTAGTCTTCTAAAAAGTAGAACCGCTGTTTTGGCCAATGGAAG
AACTTCTTTTTCGCGCCCAGCTGTAGTTATAAATTGTGAGTGTTTCTCTTTTCTCTTCAG
TCTCTTCTGTGCCAGTTTCCTATTGCGGAATCATGTCTGGACGTGGGAAGCAGGGAGGTA
AAGCTCGCGCCAAGGCCAAGACCCGCTCCTCGCGAGCCGGGCTCCAGTTCCCGGTGGGCC
GAGTGCACCGCCTGCTCCGCAAGGGCAACTATGCCGAGCGGGTTGGAGCTGGGGCGCCGG
TGTACTTGGCGGCGGTGCTGGAGTACCTGACGGCCGAGATCCTGGAGCTGGCGGGCAACG
CGGCTCGCGATAACAAGAAGACGCGCATCATCCCGCGCCACTTGCAGCTGGCCATCCGCA
ACGACGAGGAGCTCAACAAGCTGCTGGGCAAAGTCACCATCGCTCAGGGCGGCGTCCTGC
CCAACATCCAGGCGGTGCTGCTGCCCAAGAAGACCGAGAGCCACCACAAGGCCAAGGGCA
AGTAAGGTTTCCGCAGCAAAGCCTTCTAAACCAAAGGCTCTTTTCAGCCCCACCTACTTT
TTCTGTGGAAGAGCTGGCTCGTGTCAATCCAATAGTCACTGTTACCGGTGGTTTGCGGAA
GTTGAGCCAAGAGCCATCTTAAAAAAATCGGGAACTTCTCCCTCCCCCTTGTGGCTCAAC
GAACCCAAAAACAAATAGTACACACGAGAGATGCGTGTTGGGTTGGATCCCTGGTGCACC
CCCGGTTTTTGAGCTTGGGGCTAAAGGATCCCGCGTTCGTGTGACCTTTGGCTTTTAGGA
CACTCATACCGATCAGATCTCGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGCATCGGGTTCTTTTTATTTACAACTCCTTATGCAAATTATATCTAGTGAATGCCT
AGGTCTGATTGGGAAATACTAGTAATGATGTCATTTTCAATGATATCCAATCAGAACGCG
CATCTACAGGAACTGTATTAGTCTTCTAAAAAGTAGAACCGCTGTTTTGGCCAATGGAAG
AACTTCTTTTTCGCGCCCAGCTGTAGTTATAAATTGTGAGTGTTTCTCTTTTCTCTTCAG
TCTCTTCTGTGCCAGTTTCCTATTGCGGAATCATGTCTGGACGTGGGAAGCAGGGAGGTA
AAGCTCGCGCCAAGGCCAAGACCCGCTCCTCGCGAGCCGGGCTCCAGTTCCCGGTGGGCC
GAGTGCACCGCCTGCTCCGCAAGGGCAACTATGCCGAGCGGGTTGGAGCTGGGGCGCCGG
TGTACTTGGCGGCGGTGCTGGAGTACCTGACGGCCGAGATCCTGGAGCTGGCGGGCAACG
CGGCTCGCGATAACAAGAAGACGCGCATCATCCCGCGCCACTTGCAGCTGGCCATCCGCA
ACGACGAGGAGCTCAACAAGCTGCTGGGCAAAGTCACCATCGCTCAGGGCGGCGTCCTGC
CCAACATCCAGGCGGTGCTGCTGCCCAAGAAGACCGAGAGCCACCACAAGGCCAAGGGCA
AGTAAGGTTTCCGCAGCAAAGCCTTCTAAACCAAAGGCTCTTTTCAGCCCCACCTACTTT
TTCTGTGGAAGAGCTGGCTCGTGTCAATCCAATAGTCACTGTTACCGGTGGTTTGCGGAA
GTTGAGCCAAGAGCCATCTTAAAAAAATCGGGAACTTCTCCCTCCCCCTTGTGGCTCAAC
GAACCCAAAAACAAATAGTACACACGAGAGATGCGTGTTGGGTTGGATCCCTGGTGCACC
CCCGGTTTTTGAGCTTGGGGCTAAAGGATCCCGCGTTCGTGTGACCTTTGGCTTTTAGGA
CACTCATACCGATCAGATCTCGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q76PA6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q76PA6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               326-451, - strand, RNAz p=0.907962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               326-451, - strand, RNAz p=0.907962

ncRNA annotation: 1 entry(ies)

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               691-716, , RaveNnA Score=26.11

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               691-716, , RaveNnA Score=26.11

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-737, gnl|bosTau2|chr3 (62448518-62447808)
               

               
               22-737, gnl|Hg17|chr6 (27940855-27941576)
               

               
               22-737, gnl|Mm7|chr13 (21088021-21087425)
               


               
               246-663, gnl|bosTau2|chr12 (1673255-1672839)
               

               
               246-663, gnl|Hg17|chr6 (26380789-26380415)
               

               
               246-663, gnl|Mm7|chr13 (22899896-22900290)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-737, gnl|bosTau2|chr3 (62448518-62447808)
               

               
               22-737, gnl|Hg17|chr6 (27940855-27941576)
               

               
               22-737, gnl|Mm7|chr13 (21088021-21087425)
               


               
               246-663, gnl|bosTau2|chr12 (1673255-1672839)
               

               
               246-663, gnl|Hg17|chr6 (26380789-26380415)
               

               
               246-663, gnl|Mm7|chr13 (22899896-22900290)

	22-737, gnl\|bosTau2\|chr3 (62448518-62447808)
	22-737, gnl\|Hg17\|chr6 (27940855-27941576)
	22-737, gnl\|Mm7\|chr13 (21088021-21087425)

	246-663, gnl\|bosTau2\|chr12 (1673255-1672839)
	246-663, gnl\|Hg17\|chr6 (26380789-26380415)
	246-663, gnl\|Mm7\|chr13 (22899896-22900290)