Non-Coding RNA Search

raor018_m9r1.y1

Sequence:


               
               TGTGTTTGCACTTTCCTTCAATAGCTCTAATAATTTAACTTGATTTTATGAGGACAAGAA
AAAGAAACCTGTCTGAGAGAAGGAAAGCCTGACCAAAATGATAAAACCAGAATGTAGGTA
AGTGCTAACAGCATAGTTTTACTTGTATAAAGTATCTAATACTTCCTTTCTGAAATGAAG
ATTGATTTCAACTGCTGTATCGTTTATGAGTTTTGTTCTGTGAAGTATTCCTTTATTTAT
TTATGTTTTTATTTTTTTGGTCCATGGATCTCAATTCCCAGAGCAGGGATCAAACCTGGG
CTGCAGCAGTGAAAACACTGAGTCCTAACCACAAGACAACCAGAGAACTACCCCATTCCT
TTATTTTGATAAATGTGTTTTGCAGTGTTATTCCCTTACTAACAGCCATACGTAACAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTTTGCACTTTCCTTCAATAGCTCTAATAATTTAACTTGATTTTATGAGGACAAGAA
AAAGAAACCTGTCTGAGAGAAGGAAAGCCTGACCAAAATGATAAAACCAGAATGTAGGTA
AGTGCTAACAGCATAGTTTTACTTGTATAAAGTATCTAATACTTCCTTTCTGAAATGAAG
ATTGATTTCAACTGCTGTATCGTTTATGAGTTTTGTTCTGTGAAGTATTCCTTTATTTAT
TTATGTTTTTATTTTTTTGGTCCATGGATCTCAATTCCCAGAGCAGGGATCAAACCTGGG
CTGCAGCAGTGAAAACACTGAGTCCTAACCACAAGACAACCAGAGAACTACCCCATTCCT
TTATTTTGATAAATGTGTTTTGCAGTGTTATTCCCTTACTAACAGCCATACGTAACAACT

ncRNA annotation: 1 entry(ies)

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               346-275, tRNA Pseudo : RF00005;tRNA; (BX296548.20/172060-172131), RaveNnA 
Score=25.87

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               346-275, tRNA Pseudo : RF00005;tRNA; (BX296548.20/172060-172131), RaveNnA 
Score=25.87

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.195274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)