Non-Coding RNA Search

Ss1.1-Mixn-0008l18.5

Sequence:


               
               AGATTTTTTTGGGTTGAGAGTATGAATTGCTCAGTATCAGAATGTAACATGTGAGTATAA
TCACAGAGTGTGTGAAGTGTTCTGGATCACTTGAAAGTGCCCCATCATTTTTGTGAGGAG
ATGGATATGATCCTTGATCTCGATATGCCACATCTGCTATAAACTTCTGAACCCTCCACC
ATCATTCAGGATGCATCTCTAATGGTTGAAGAAGTGGTGGAGGAGCACATGGGAGAGAGC
CTGAGGATCCCTGCCTGGGACAAGTTGTGGGAAGAAAGATCTTGCAGCGTGAGCACTAGG
AAAAGAGCTCTTTTTATCCCATCTTGTCTTCCAGTCTGTTTTGAATCAAGAAAGACTTAT
TGAAAACTCCTTTGAGAAGAGTCTGTTTTGAAGAAGGAAAAAGAAATACTGTTGAGAGAA
GGCATACAGACCAGAAGGGTGATAGAAACATGTGTTTTTGTTGTGTGTGTTACACCAGCA
GAGAATATGGAGAGCTGAGAAGGGAGAAAACTAAGAAGTGACTGAAATTTGTGGGTCCTG
ATGGGAAAATGCTGGCCATCTACTAATATGGGAAGACAGTTGATGCTTTAGTGCCCGGAC
TTGTTGACTCTGTTGTGTATAGTTACCATAAACTCTTCTCACATTCAGAATTACCTCTTT
GTTCTCTGTGAATGATGGCACTCCTGCTTCTATTTCAGCAGTGCTTCCAAGGATGAATGA
CACTATATGGTGTCTGCCCAAACCTAAAAAGTATAATCTGTTTATCACTGGAGCTTTGCA
AGGTACCCCTCTTGCATTTTAAAATTCTGTAGTGCACACAACCAGTCATCGTAGGGTTTG
GTTTTGTTTTTTTGTTTGTTTAATCAACAGATACTGGATTTTCAAGATGAAGTATAATGA
TTCCTAATCAAATTGTGGTCAGTTTTCTTCAATTTAAATAAAATAATAAAATAAGATTTT
ATTTTTTACACTTAGATTGGTATGTGTTTTTTGGTGTGTAACCATATGATTCACTGTTTT
TCTTGAGATTTTAACAGACATTGTCTTACTGTATATGTCAAAATAAAATTTTAATAGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATTTTTTTGGGTTGAGAGTATGAATTGCTCAGTATCAGAATGTAACATGTGAGTATAA
TCACAGAGTGTGTGAAGTGTTCTGGATCACTTGAAAGTGCCCCATCATTTTTGTGAGGAG
ATGGATATGATCCTTGATCTCGATATGCCACATCTGCTATAAACTTCTGAACCCTCCACC
ATCATTCAGGATGCATCTCTAATGGTTGAAGAAGTGGTGGAGGAGCACATGGGAGAGAGC
CTGAGGATCCCTGCCTGGGACAAGTTGTGGGAAGAAAGATCTTGCAGCGTGAGCACTAGG
AAAAGAGCTCTTTTTATCCCATCTTGTCTTCCAGTCTGTTTTGAATCAAGAAAGACTTAT
TGAAAACTCCTTTGAGAAGAGTCTGTTTTGAAGAAGGAAAAAGAAATACTGTTGAGAGAA
GGCATACAGACCAGAAGGGTGATAGAAACATGTGTTTTTGTTGTGTGTGTTACACCAGCA
GAGAATATGGAGAGCTGAGAAGGGAGAAAACTAAGAAGTGACTGAAATTTGTGGGTCCTG
ATGGGAAAATGCTGGCCATCTACTAATATGGGAAGACAGTTGATGCTTTAGTGCCCGGAC
TTGTTGACTCTGTTGTGTATAGTTACCATAAACTCTTCTCACATTCAGAATTACCTCTTT
GTTCTCTGTGAATGATGGCACTCCTGCTTCTATTTCAGCAGTGCTTCCAAGGATGAATGA
CACTATATGGTGTCTGCCCAAACCTAAAAAGTATAATCTGTTTATCACTGGAGCTTTGCA
AGGTACCCCTCTTGCATTTTAAAATTCTGTAGTGCACACAACCAGTCATCGTAGGGTTTG
GTTTTGTTTTTTTGTTTGTTTAATCAACAGATACTGGATTTTCAAGATGAAGTATAATGA
TTCCTAATCAAATTGTGGTCAGTTTTCTTCAATTTAAATAAAATAATAAAATAAGATTTT
ATTTTTTACACTTAGATTGGTATGTGTTTTTTGGTGTGTAACCATATGATTCACTGTTTT
TCTTGAGATTTTAACAGACATTGTCTTACTGTATATGTCAAAATAAAATTTTAATAGTAA

ncRNA annotation: 1 entry(ies)

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               339-401, , RaveNnA Score=16.29

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               339-401, , RaveNnA Score=16.29

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)
               

               
               spc (0.113366)