Non-Coding RNA Search

Ss1.1-rcad24b_l22.5

Sequence:


               
               CAAGGAGCGGCTGTCCCGGGTCTCCGGGCCTAGGAGGCACTACTCTCAGAGGGTGGCCAG
CGGTGATGACATTCCAATAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACAGGA
ATCTGAGCCCGGCCGCCTGCGAAGGCGGGGGAAAAAATGGCCCAGCGGGTATACCCATTT
CTTAACCTACTTTTCTCCTTGTTGGAGATCCCGGCCGGGAGGACGTCGGATCTCGTTGTT
ATCCCAATCTTTCGACCCTCCCCCAAAGCCCCTCAATAAAGTGCATTGATCTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAGCGGCTGTCCCGGGTCTCCGGGCCTAGGAGGCACTACTCTCAGAGGGTGGCCAG
CGGTGATGACATTCCAATAAAGCACGTGTTAGACTGCTGACGCGGGTGATGCGAACAGGA
ATCTGAGCCCGGCCGCCTGCGAAGGCGGGGGAAAAAATGGCCCAGCGGGTATACCCATTT
CTTAACCTACTTTTCTCCTTGTTGGAGATCCCGGCCGGGAGGACGTCGGATCTCGTTGTT
ATCCCAATCTTTCGACCCTCCCCCAAAGCCCCTCAATAAAGTGCATTGATCTCAAAAAAA

ncRNA annotation: 1 entry(ies)

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               63-128, RF00289;snoZ12; (AY349605.1/6-75), blast E-value=8e-22

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               63-128, RF00289;snoZ12; (AY349605.1/6-75), blast E-value=8e-22

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               nms (0.427716)
               

               
               elu (0.385356)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               elu (0.385356)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)

	nms (0.427716)
	elu (0.385356)
	nje (0.16592)
	nco (0.161734)
	cag (0.151194)
	pty (0.142714)