Non-Coding RNA Search

Ss1.1-rcbl0_022857.5

Sequence:


               
               GCGGCCGCTGTGGACTGACGCCTGCCTGCCAGCTGAGGGGAAAGAAGCAACCAACAAAAT
ACAGTAATAACAAGGATTATTCACGGTGGCATTTGGAGGGTATGTCTTGGAGCTGGAAGA
GTCACCTTTATATAAGCCACATCTGAACAATTGGCATTGGTGTTCAGAATGATTTTCAGG
CATTGCAATATCCTGAAAGATCAAAAATGATGTCATTATTTCCTATGCTACTTGANATAC
ACTTCATAGTGAGATTAAACAGTTAGTACTTAANAAGATGTTCAATAACAAGGATCTTTT
TCCTACTAACTTTGAGTTACTCGTAACTTCCTGTTTTTAGATATACAGTTGGAGTTTCAT
AGGCAGTGAAAAAGGGTATGTATACCAAAAAAGTACCACGAAAATTAAATTCTTCCATAT
GTTGTGGGTGAGGCCTGAAAAAGAAAAAGGAAAAGAAATGTGATTTTGTTTCTGAAGTTA
ATTTGCAGAAATAGTGTAGCATAGTGGTTAAAGCACCGATTTTGATGTCAGGGTAGCCCT
GAGTTCAAATCCCAGCTCTTTTACACACTGGCCTGTAGCCTAGGCCAGGTTACTAGGCTT
CAAAATGATACTAATAATTCCTATCTCCGAGGGCAGTTGTAAGCTTTAAATGGGGGTGAT
ATAAAGCATTTGGTAGGTGACTAGCATATTGTACTCATTCAGTGAATGCTAGTTGATATT
TGTCATTATATTAATTACTGAAATATAAGAAACATTAATAAACATATTAACATTGGCTTT
TTAAGCATAGATACGTATATGTGTGTCTATATATGCACATATGTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGTGGACTGACGCCTGCCTGCCAGCTGAGGGGAAAGAAGCAACCAACAAAAT
ACAGTAATAACAAGGATTATTCACGGTGGCATTTGGAGGGTATGTCTTGGAGCTGGAAGA
GTCACCTTTATATAAGCCACATCTGAACAATTGGCATTGGTGTTCAGAATGATTTTCAGG
CATTGCAATATCCTGAAAGATCAAAAATGATGTCATTATTTCCTATGCTACTTGANATAC
ACTTCATAGTGAGATTAAACAGTTAGTACTTAANAAGATGTTCAATAACAAGGATCTTTT
TCCTACTAACTTTGAGTTACTCGTAACTTCCTGTTTTTAGATATACAGTTGGAGTTTCAT
AGGCAGTGAAAAAGGGTATGTATACCAAAAAAGTACCACGAAAATTAAATTCTTCCATAT
GTTGTGGGTGAGGCCTGAAAAAGAAAAAGGAAAAGAAATGTGATTTTGTTTCTGAAGTTA
ATTTGCAGAAATAGTGTAGCATAGTGGTTAAAGCACCGATTTTGATGTCAGGGTAGCCCT
GAGTTCAAATCCCAGCTCTTTTACACACTGGCCTGTAGCCTAGGCCAGGTTACTAGGCTT
CAAAATGATACTAATAATTCCTATCTCCGAGGGCAGTTGTAAGCTTTAAATGGGGGTGAT
ATAAAGCATTTGGTAGGTGACTAGCATATTGTACTCATTCAGTGAATGCTAGTTGATATT
TGTCATTATATTAATTACTGAAATATAAGAAACATTAATAAACATATTAACATTGGCTTT
TTAAGCATAGATACGTATATGTGTGTCTATATATGCACATATGTGATT

ncRNA annotation: 1 entry(ies)

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               490-563, tRNA Pseudo, RaveNnA Score=25.89

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               490-563, tRNA Pseudo, RaveNnA Score=25.89

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)