Non-Coding RNA Search

Ss1.1-Mixn-0033o14.5

Sequence:


               
               ATAACGACTGGTCTTGTCTTGTTTATTTTCTTTTTATTTTTTTTGCTATGTCGGGACGTG
GCAAACAAGGAGGAAAGGCTCGGGCCAAGGCCAAGTCTCGTTCCTCGCGCGCCGGACTCC
AGTTCCCGGTGGGCCGAGTGCACCGCCTGCTTCGCAAAGGCAACTACGCCGAGCGGGTGG
GCGCTGGCGCTCCGGTATATCTGGCGGCGGTGTTGGAGTATCTGACAGCTGAGATCCTGG
AGTTGGCTGGCAACGCGGCTCGCGACAACAAGAAGACCCGCATTATCCCGCGCCACCTGC
AGCTGGCCATCCGCAACGACGAAGAGCTCAATAAGCTACTGGGCCGCGTGACCATCGCTC
AGGGCGGCGTCCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAGACCGAGAGCCACC
ACAAGGCCAAGGGCAAGTGATTAATTAGACCAGTACCAGAGTTTCCGGAAGTGCTTTCAA
ACCCAAAGGCTCTTTTCAGAGCCCCCCACTATTTCAAAAAAAAGAGCTAGTGACATTATA
GATGAAAGGGGAAAGAAAAAGGCGAGGCAAAGGTTTCAAAACCTGCTGACTCCAAAGAGA
TGTGTGGATCCAGAGCATCCCATCAAATTCATCAATTCTCAGAAATAAATGCATTGGCAC
CGGTGTTCTGACGTCATTGACTGATCCTGCACCTGCAAAATTTTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAACGACTGGTCTTGTCTTGTTTATTTTCTTTTTATTTTTTTTGCTATGTCGGGACGTG
GCAAACAAGGAGGAAAGGCTCGGGCCAAGGCCAAGTCTCGTTCCTCGCGCGCCGGACTCC
AGTTCCCGGTGGGCCGAGTGCACCGCCTGCTTCGCAAAGGCAACTACGCCGAGCGGGTGG
GCGCTGGCGCTCCGGTATATCTGGCGGCGGTGTTGGAGTATCTGACAGCTGAGATCCTGG
AGTTGGCTGGCAACGCGGCTCGCGACAACAAGAAGACCCGCATTATCCCGCGCCACCTGC
AGCTGGCCATCCGCAACGACGAAGAGCTCAATAAGCTACTGGGCCGCGTGACCATCGCTC
AGGGCGGCGTCCTGCCCAACATCCAGGCCGTGCTGCTGCCCAAGAAGACCGAGAGCCACC
ACAAGGCCAAGGGCAAGTGATTAATTAGACCAGTACCAGAGTTTCCGGAAGTGCTTTCAA
ACCCAAAGGCTCTTTTCAGAGCCCCCCACTATTTCAAAAAAAAGAGCTAGTGACATTATA
GATGAAAGGGGAAAGAAAAAGGCGAGGCAAAGGTTTCAAAACCTGCTGACTCCAAAGAGA
TGTGTGGATCCAGAGCATCCCATCAAATTCATCAATTCTCAGAAATAAATGCATTGGCAC
CGGTGTTCTGACGTCATTGACTGATCCTGCACCTGCAAAATTTTCCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q540R1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q540R1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               449-584, - strand, RNAz p=0.997474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-584, - strand, RNAz p=0.997474

ncRNA annotation: 1 entry(ies)

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               483-508, , RaveNnA Score=36.98

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               483-508, , RaveNnA Score=36.98

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               16-584, gnl|bosTau2|chr23 (24222958-24222395)
               

               
               16-584, gnl|Hg17|chr6 (26232408-26232976)
               

               
               16-584, gnl|Mm7|chr13 (23049758-23049255)
               


               
               47-531, gnl|bosTau2|chr12 (1673230-1672746)
               

               
               47-531, gnl|Mm7|chr13 (22899899-22900378)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-584, gnl|bosTau2|chr23 (24222958-24222395)
               

               
               16-584, gnl|Hg17|chr6 (26232408-26232976)
               

               
               16-584, gnl|Mm7|chr13 (23049758-23049255)
               


               
               47-531, gnl|bosTau2|chr12 (1673230-1672746)
               

               
               47-531, gnl|Mm7|chr13 (22899899-22900378)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               cov (0.132153)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               cov (0.132153)

	16-584, gnl\|bosTau2\|chr23 (24222958-24222395)
	16-584, gnl\|Hg17\|chr6 (26232408-26232976)
	16-584, gnl\|Mm7\|chr13 (23049758-23049255)

	47-531, gnl\|bosTau2\|chr12 (1673230-1672746)
	47-531, gnl\|Mm7\|chr13 (22899899-22900378)

	sme (0.305437)
	ldo (0.291008)
	ssp (0.271039)
	nms (0.213858)
	nep (0.183925)
	cag (0.151194)
	ste (0.135208)
	cov (0.132153)