Non-Coding RNA Search

Ss1.1-Emb1-C0005215_M24.5

Sequence:


               
               TGTGCTAGGAGCGATGGCTCTCGGTGTAACGGAGCTCTTAAGTGAAGATGCTGAGAGGAA
AAGGAAGAGTGCAAAACATAGGGGAGAATGTTTGCTGGAAAACGACATGGTTAAAACCTA
ACGATCTTAGCAGGTATGTGTTTAGCTAGTATTTTGAGTCTGCATATGCTTTTTCCATAG
ACAGGTTAAATGAGTTTTGGGTTTTTTTTCTTGTGCTCAAAACAGCATCCTGCAGGTTGT
TGATTGCTAATGAAGTTATGGATATCTCTGATGGCAGCGTCATTCTGAAGTAAGTTATGT
GGCTTACAACATCTATAGTATTTCTAACGTACTTTTAATGTTGCTTTGGTTTATGGTAAA
TCACTGGTAGTGCTTTGGTCTGATCAATGATGAAACCTATCCCGAAGCTGATTACCTGAA
GAAAAAAAAGCACATACGGATTCGGCTTCTGAGATAAGACCAATGTGCAGATGTGAAGTT
ATTGGTGCCTGGATTTTATAATTTGAGAAGTTTGTTACATTGTGTCTTTTTTTTTTTTTC
CCCTCTGCCAACAGTGAGGGGTCGCTGTCTGCCTATTGAAAGAGGCCAGATTGCTGTGAA
GTTCCTGAGATATTTCTGTGAGTAGACATACTTTTCTTGACAGTCAACATTATGTCCTTG
GTCTGTCTATGATGATCCTATCCCGAACCTGAATTTCTGTTGAAAAACCTTATACGGATC
TGGCTTCTGAGATAGACCATTATAAGGACAATAAATAGTACTTTGTGAAATACTTTCTTC
TTTTTTTTTTTTTTTTTAAGTTTTCCTTATGTTTATAGTCTTGTAAAGCTAAAGTGTTTT
TCCTTTTCTAGGGCTAATGCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTAGGAGCGATGGCTCTCGGTGTAACGGAGCTCTTAAGTGAAGATGCTGAGAGGAA
AAGGAAGAGTGCAAAACATAGGGGAGAATGTTTGCTGGAAAACGACATGGTTAAAACCTA
ACGATCTTAGCAGGTATGTGTTTAGCTAGTATTTTGAGTCTGCATATGCTTTTTCCATAG
ACAGGTTAAATGAGTTTTGGGTTTTTTTTCTTGTGCTCAAAACAGCATCCTGCAGGTTGT
TGATTGCTAATGAAGTTATGGATATCTCTGATGGCAGCGTCATTCTGAAGTAAGTTATGT
GGCTTACAACATCTATAGTATTTCTAACGTACTTTTAATGTTGCTTTGGTTTATGGTAAA
TCACTGGTAGTGCTTTGGTCTGATCAATGATGAAACCTATCCCGAAGCTGATTACCTGAA
GAAAAAAAAGCACATACGGATTCGGCTTCTGAGATAAGACCAATGTGCAGATGTGAAGTT
ATTGGTGCCTGGATTTTATAATTTGAGAAGTTTGTTACATTGTGTCTTTTTTTTTTTTTC
CCCTCTGCCAACAGTGAGGGGTCGCTGTCTGCCTATTGAAAGAGGCCAGATTGCTGTGAA
GTTCCTGAGATATTTCTGTGAGTAGACATACTTTTCTTGACAGTCAACATTATGTCCTTG
GTCTGTCTATGATGATCCTATCCCGAACCTGAATTTCTGTTGAAAAACCTTATACGGATC
TGGCTTCTGAGATAGACCATTATAAGGACAATAAATAGTACTTTGTGAAATACTTTCTTC
TTTTTTTTTTTTTTTTTAAGTTTTCCTTATGTTTATAGTCTTGTAAAGCTAAAGTGTTTT
TCCTTTTCTAGGGCTAATGCCACA

ncRNA annotation: 2 entry(ies)

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               382-455, RF00278;U50; (AB017710.1/1702-1771) : U50 (gnl|combinedlit|LIT1096), 
RaveNnA Score=35.39 
               

               
               664-733, RF00278;U50; (AB116374.1/1155-1226) : TF21078 (gnl|fantom2|FT26337) : 
MBII-422 (gnl|combinedlit|LIT1030), RaveNnA Score=47.37

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               382-455, RF00278;U50; (AB017710.1/1702-1771) : U50 (gnl|combinedlit|LIT1096), 
RaveNnA Score=35.39 
               

               
               664-733, RF00278;U50; (AB116374.1/1155-1226) : TF21078 (gnl|fantom2|FT26337) : 
MBII-422 (gnl|combinedlit|LIT1030), RaveNnA Score=47.37

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cbl (0.344392)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               sug (0.127291)

	382-455, RF00278;U50; (AB017710.1/1702-1771) : U50 (gnl\|combinedlit\|LIT1096), RaveNnA Score=35.39
	664-733, RF00278;U50; (AB116374.1/1155-1226) : TF21078 (gnl\|fantom2\|FT26337) : MBII-422 (gnl\|combinedlit\|LIT1030), RaveNnA Score=47.37