Non-Coding RNA Search

Ss1.1-Pig3-SRG8015F02.3

Sequence:


               
               CTGGACACTTTATTCTACCCGAAAGCCTCACCTTCAGAAGGGTCCTCGTCCTGGGAATGA
GAGCGGTATGTAGGGGTCTCTCTAACGGTCACCCTCGGTGGCCGTCACAAGGGTAATTAA
AGCTGGACGTCACCCGCTGTACTAAAGAGAAAGAAATCTAGTTTTCTTTGGCTGTAGCTG
CAGCGTGCCGTAAATCCCTGGCCAGGGATTGAACCTGCACCACAGCAGTCACCATGCTGG
ATCTCCACCCCACTGAGCCACCAGGGAACGCCAAGAAATGCAGTTTTTGTAATGTTTGAA
TGGTGTATTTGTCATGTGTGTCCTGTGGAAAGTCGCGAGGGCATAGGGTTGGAAGAAAGT
TGAGGCAGCTGTGGGCAGGGCGTCTGGCCCCATCATGTACCCCCCAGATGAGGCTTGCCC
TCTGGGTAAGGGAATCTTCTTGATGGTTTGGTGCTCGATGGCGCAGTCGCTTGTTCAAGG
TGAGACCTCTGGAGGGATTGTTTCTTTTTATCGATGGCTGGTGAATGGTCTGTAGTCCTG
GCTGATTTCACTCATATGATGCGTCAGGGATAGTCGGAAATAGCCATAGCGATAGAGCCT
CGGGTGGGTTGGATGGGGTAACCCCAGAATAACCTCAGAGGAACCCCATCGGTCTGTTCC
TGAGAAGGACCCGTGTGCGCTCTGGGCCACGGTGTTGGACTATGACAAACAGAAGTATGA
GTCTGGCATCCAGATGTGTGAGAATTCCAGGCAATGAACATTGGAGTCCCGTCCAGCTTC
TCTGGGAAGAGGATGCGTGCGTAAGGGCGATGACTCACCAGCTGAATGTGGACGCTCGAC
CTCTTGTGCCTTCTAGGGTCTGTGCCTTCTAGGGTTTGGATGACGGCAAATGTATTGCAA
TTAAAATTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACACTTTATTCTACCCGAAAGCCTCACCTTCAGAAGGGTCCTCGTCCTGGGAATGA
GAGCGGTATGTAGGGGTCTCTCTAACGGTCACCCTCGGTGGCCGTCACAAGGGTAATTAA
AGCTGGACGTCACCCGCTGTACTAAAGAGAAAGAAATCTAGTTTTCTTTGGCTGTAGCTG
CAGCGTGCCGTAAATCCCTGGCCAGGGATTGAACCTGCACCACAGCAGTCACCATGCTGG
ATCTCCACCCCACTGAGCCACCAGGGAACGCCAAGAAATGCAGTTTTTGTAATGTTTGAA
TGGTGTATTTGTCATGTGTGTCCTGTGGAAAGTCGCGAGGGCATAGGGTTGGAAGAAAGT
TGAGGCAGCTGTGGGCAGGGCGTCTGGCCCCATCATGTACCCCCCAGATGAGGCTTGCCC
TCTGGGTAAGGGAATCTTCTTGATGGTTTGGTGCTCGATGGCGCAGTCGCTTGTTCAAGG
TGAGACCTCTGGAGGGATTGTTTCTTTTTATCGATGGCTGGTGAATGGTCTGTAGTCCTG
GCTGATTTCACTCATATGATGCGTCAGGGATAGTCGGAAATAGCCATAGCGATAGAGCCT
CGGGTGGGTTGGATGGGGTAACCCCAGAATAACCTCAGAGGAACCCCATCGGTCTGTTCC
TGAGAAGGACCCGTGTGCGCTCTGGGCCACGGTGTTGGACTATGACAAACAGAAGTATGA
GTCTGGCATCCAGATGTGTGAGAATTCCAGGCAATGAACATTGGAGTCCCGTCCAGCTTC
TCTGGGAAGAGGATGCGTGCGTAAGGGCGATGACTCACCAGCTGAATGTGGACGCTCGAC
CTCTTGTGCCTTCTAGGGTCTGTGCCTTCTAGGGTTTGGATGACGGCAAATGTATTGCAA
TTAAAATTTTAA

ncRNA annotation: 1 entry(ies)

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               267-194, tRNA His, RaveNnA Score=28.32

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               267-194, tRNA His, RaveNnA Score=28.32

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               hyp (0.142837)