Non-Coding RNA Search

Ss1.1-rpigcb_17872.5

Sequence:


               
               CGGCATTGCCGTGAGCTGTGGTGTAGGTTGCATACGTGGCTCGGATCCCGAGTTGCTGTG
GCTCTGGCGTAGGCCTGTGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAACCTCCATA
TGCCGCAGGAGCGGCCCAAGAAATAGCAACAATAACAACAACAAAAGACAAAAAAAAAAA
ATTATCGGGGCCTTTGAAATATTTTTCCTTTGCTGACTGGCAGGATAAGGTTTGCCAGTA
GAGGGCGAGCAAGAAACATCCTCAAGAGGAAAGGCTTTTGCTTCCCGGTTCTGCTCAGGT
GTGTCCAGAATTCCCAGCACCTGGGGATCAGCGGCGTCCCCTGGCGACCCCCCCCCTGCA
GTTTTTAGAGGAATGCCTCCACTGAGGCACCCCCCTGTGGATGCTTCTCCATCACACCCC
CGAAGATGGATTTCCAATAAATTCTGAGGCACCTTACCAAAGACTCCTTTATTTCAAATT
TACTGTTAGTCATTTTGGCCGCATTCACAGCATGCAGAAGTTCCCAGGCCAAGGATCAAA
CCTGTGCCACAGCCGTGACAACGCCAGACCCTTTAACCACTAGGCCACCAGGGAATTCCA
ATAATTCTTTACATTAAACTTTCCCTGTTCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCATTGCCGTGAGCTGTGGTGTAGGTTGCATACGTGGCTCGGATCCCGAGTTGCTGTG
GCTCTGGCGTAGGCCTGTGGCTACAGCTCCGATTCAACCCCTAGCCTGGGAACCTCCATA
TGCCGCAGGAGCGGCCCAAGAAATAGCAACAATAACAACAACAAAAGACAAAAAAAAAAA
ATTATCGGGGCCTTTGAAATATTTTTCCTTTGCTGACTGGCAGGATAAGGTTTGCCAGTA
GAGGGCGAGCAAGAAACATCCTCAAGAGGAAAGGCTTTTGCTTCCCGGTTCTGCTCAGGT
GTGTCCAGAATTCCCAGCACCTGGGGATCAGCGGCGTCCCCTGGCGACCCCCCCCCTGCA
GTTTTTAGAGGAATGCCTCCACTGAGGCACCCCCCTGTGGATGCTTCTCCATCACACCCC
CGAAGATGGATTTCCAATAAATTCTGAGGCACCTTACCAAAGACTCCTTTATTTCAAATT
TACTGTTAGTCATTTTGGCCGCATTCACAGCATGCAGAAGTTCCCAGGCCAAGGATCAAA
CCTGTGCCACAGCCGTGACAACGCCAGACCCTTTAACCACTAGGCCACCAGGGAATTCCA
ATAATTCTTTACATTAAACTTTCCCTGTTCAAAAAA

ncRNA annotation: 1 entry(ies)

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               594-521, tRNA Pseudo, RaveNnA Score=27.08

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               594-521, tRNA Pseudo, RaveNnA Score=27.08

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               elu (0.385356)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	elu (0.385356)
	ece (0.229305)
	mas (0.210305)
	fty (0.17584)
	csp (0.161186)
	cli (0.152812)
	ese (0.126502)
	tra (0.123092)
	cty (0.10408)