Non-Coding RNA Search

Ss1.1-Pig4-TMW8030H23.5

Sequence:


               
               TTGTGATGGTGTTTTCTGGTGTTGGACAGTTGGAGTATTGAAGCTATTTTGAAATGTGTC
TGAAGAAATAATTTTTTTCAGGTGCAGATTTTGAGGACCTTTTGTATAAAGGTATGTATG
TATTTTTATCAATTGTACTAGTTAGTAAGCAAAATGCTGTTAGTGATGATTTATAAAATT
AAACAGATGGGAATCTCTCTGAAAAATAATGAAGATTTTTAAAAACTGAAACAGTGTTCA
GAAGTTTTTTAAAAATTGTATTTCTACCTTATTAAATTTCATTAAGTTTCATTAAATTCT
GCAGGTGTGAAGAGGCCTTGGCTACAAGGCATTGATTGGAACATGCCTTAAAAGGTATTG
TAGCCTTAAGTTAGGTTTCTGTTTTATGTGATTTTTCTTTTTTAAGCCGATACAATGATG
ATAACATAGTTCAGCAGACTTGACAGTGATGAGCAAATAACTGTCTTTCGCTCCTATCTG
ATGTATCTGGCTGTAACAATTCTGTTTATACAGTTTCTCAGAAATGTTAATGGATTTGGA
TAAGCCTAATGACTAATGGAGATGTCCTATACTATTAAACTTAAGTCATAGTCAAGCTTA
GGGTTACCAAGAGGGAAACTGAAGGCACACTACATACAAGGTAGCTAACCAGGGACCAAC
TATAATAGCACAGTGTGGTCTACTCAGTGTTAACCTAAAGCTAATACAACTTAATTCAAC
TATACTCCAATAAAAACATTAAAATTCCAGAATTACCAATTGACATTTAGATGAAGACAG
GCTAACATTCTTGTGAGGAAGTTTTTATGGTATATAATGTACATAATGCCAGATGACTTG
TTTAGTTGATTATTTTAGAATCATTTTTTAGATCGGCTTGGGATTCATAGCAAAGTTAAC
CACATACCATGCACACAAAATCTAGCACTGGAATAGTACGTTGGGGTTCACTCATGTTCT
GAGTGGGGACAAGTGCTGACAAACACAACATACAAAATACGTTCACTGTCCTAAATTTTT
TCACATTTTCAAACAGGCAGATCTTCTGTTACCCTGAAGATTCAAAGTAAGTCAGCCTTT
TATATATAGTTATTATATGTATGTTTGAATGTAACCAGTGATGTGATGATTCTGCCAAAT
GAATAAGATGATATCACCCATAAACCGTTCCATTTTGATTCTGAGGTTACTAACAAGTAT
CACTTAAGTCTTGGGTTATTTTACTGTGATCTAACATGTTCTTTCCTTTTTAGGGCATTT
AAATGAGCAGCAGTCAACGCAACTTAACCAATTGACAGGTGAGGCTTGAAAATATTAGTA
TTCTCTTGTTCTAGAATACATGATGATCTCACCCTAACTTGAACTCTCTCACTGATTATG
TGTGATGATGATCAAAGATCTGATATTCTGTTTGCCAAATGCAGTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGATGGTGTTTTCTGGTGTTGGACAGTTGGAGTATTGAAGCTATTTTGAAATGTGTC
TGAAGAAATAATTTTTTTCAGGTGCAGATTTTGAGGACCTTTTGTATAAAGGTATGTATG
TATTTTTATCAATTGTACTAGTTAGTAAGCAAAATGCTGTTAGTGATGATTTATAAAATT
AAACAGATGGGAATCTCTCTGAAAAATAATGAAGATTTTTAAAAACTGAAACAGTGTTCA
GAAGTTTTTTAAAAATTGTATTTCTACCTTATTAAATTTCATTAAGTTTCATTAAATTCT
GCAGGTGTGAAGAGGCCTTGGCTACAAGGCATTGATTGGAACATGCCTTAAAAGGTATTG
TAGCCTTAAGTTAGGTTTCTGTTTTATGTGATTTTTCTTTTTTAAGCCGATACAATGATG
ATAACATAGTTCAGCAGACTTGACAGTGATGAGCAAATAACTGTCTTTCGCTCCTATCTG
ATGTATCTGGCTGTAACAATTCTGTTTATACAGTTTCTCAGAAATGTTAATGGATTTGGA
TAAGCCTAATGACTAATGGAGATGTCCTATACTATTAAACTTAAGTCATAGTCAAGCTTA
GGGTTACCAAGAGGGAAACTGAAGGCACACTACATACAAGGTAGCTAACCAGGGACCAAC
TATAATAGCACAGTGTGGTCTACTCAGTGTTAACCTAAAGCTAATACAACTTAATTCAAC
TATACTCCAATAAAAACATTAAAATTCCAGAATTACCAATTGACATTTAGATGAAGACAG
GCTAACATTCTTGTGAGGAAGTTTTTATGGTATATAATGTACATAATGCCAGATGACTTG
TTTAGTTGATTATTTTAGAATCATTTTTTAGATCGGCTTGGGATTCATAGCAAAGTTAAC
CACATACCATGCACACAAAATCTAGCACTGGAATAGTACGTTGGGGTTCACTCATGTTCT
GAGTGGGGACAAGTGCTGACAAACACAACATACAAAATACGTTCACTGTCCTAAATTTTT
TCACATTTTCAAACAGGCAGATCTTCTGTTACCCTGAAGATTCAAAGTAAGTCAGCCTTT
TATATATAGTTATTATATGTATGTTTGAATGTAACCAGTGATGTGATGATTCTGCCAAAT
GAATAAGATGATATCACCCATAAACCGTTCCATTTTGATTCTGAGGTTACTAACAAGTAT
CACTTAAGTCTTGGGTTATTTTACTGTGATCTAACATGTTCTTTCCTTTTTAGGGCATTT
AAATGAGCAGCAGTCAACGCAACTTAACCAATTGACAGGTGAGGCTTGAAAATATTAGTA
TTCTCTTGTTCTAGAATACATGATGATCTCACCCTAACTTGAACTCTCTCACTGATTATG
TGTGATGATGATCAAAGATCTGATATTCTGTTTGCCAAATGCAGTTAG

ncRNA annotation: 2 entry(ies)

Help | Less info


               
               411-486, RF00309;snosnR60_Z15; (AJ224029.1/3-76) : Z15 
(gnl|combinedlit|LIT1507), RaveNnA Score=47.51 
               

               
               1113-1188, RF00281;U47; (X67268.1/1927-2003) : U47 (gnl|combinedlit|LIT1014), 
RaveNnA Score=21.24

ncRNA annotation: 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               411-486, RF00309;snosnR60_Z15; (AJ224029.1/3-76) : Z15 
(gnl|combinedlit|LIT1507), RaveNnA Score=47.51 
               

               
               1113-1188, RF00281;U47; (X67268.1/1927-2003) : U47 (gnl|combinedlit|LIT1014), 
RaveNnA Score=21.24

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               lin (0.728014)
               

               
               liv (0.585137)
               

               
               ret (0.3862)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               liv (0.585137)
               

               
               ret (0.3862)
               

               
               kid (0.259471)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               ski (0.146735)
               

               
               thg (0.126791)
               

               
               tra (0.123092)

	411-486, RF00309;snosnR60_Z15; (AJ224029.1/3-76) : Z15 (gnl\|combinedlit\|LIT1507), RaveNnA Score=47.51
	1113-1188, RF00281;U47; (X67268.1/1927-2003) : U47 (gnl\|combinedlit\|LIT1014), RaveNnA Score=21.24

	lin (0.728014)
	liv (0.585137)
	ret (0.3862)
	kid (0.259471)
	cbe (0.239234)
	tes (0.207814)
	rec (0.17307)
	nco (0.161734)
	ski (0.146735)
	thg (0.126791)
	tra (0.123092)