Non-Coding RNA Search

rcsk18_h10.y1

Sequence:


               
               CGATGGGTGTGTTACTTAGCTTGATTGTGGGCATCATTTTTGCAACGTAGATGTGTATTA
TATGTTGTACGCCCAAAAGATCATATTGTACAACCCAAATATATACAGCATGTGTTTGCT
GGTCATATCTCAATAAAGCTGGGAAAAAAATAATTTCGTCTTCTCCTCACAACAACCACG
CCTATGATAATTTTATAGAAGCACAGTGCTGATCCTCGGAGGAGGTAACATCACTGGGGG
GGGGGGTGTAAAAGCAAATATTGAGggagttccctggtggcctggcagtgaagggtttgg
cattgtcactgctatggctcaggttcaattcctggccctggaacttttgcatgctgcagg
tgcagccAAAAAAATAAGTAAATAAGTAAAAGCAAATATTGAGTGTCACGGTTTCAGGCT
CCAGGCTGGGCTCAAGGGACTTGTGTTCACCAAGAGCCAAGCAGTGGGTTCACGTAGAGA
TCATGAGTTCTGGGCTCAGCCACAACCACCTGTGTGCTCTTGGACAAATGACTTAATTTC
TTTGCCTCCTCATCTATCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATGGGTGTGTTACTTAGCTTGATTGTGGGCATCATTTTTGCAACGTAGATGTGTATTA
TATGTTGTACGCCCAAAAGATCATATTGTACAACCCAAATATATACAGCATGTGTTTGCT
GGTCATATCTCAATAAAGCTGGGAAAAAAATAATTTCGTCTTCTCCTCACAACAACCACG
CCTATGATAATTTTATAGAAGCACAGTGCTGATCCTCGGAGGAGGTAACATCACTGGGGG
GGGGGGTGTAAAAGCAAATATTGAGggagttccctggtggcctggcagtgaagggtttgg
cattgtcactgctatggctcaggttcaattcctggccctggaacttttgcatgctgcagg
tgcagccAAAAAAATAAGTAAATAAGTAAAAGCAAATATTGAGTGTCACGGTTTCAGGCT
CCAGGCTGGGCTCAAGGGACTTGTGTTCACCAAGAGCCAAGCAGTGGGTTCACGTAGAGA
TCATGAGTTCTGGGCTCAGCCACAACCACCTGTGTGCTCTTGGACAAATGACTTAATTTC
TTTGCCTCCTCATCTATCAA

ncRNA annotation: 1 entry(ies)

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               271-343, , RaveNnA Score=34.11

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               271-343, , RaveNnA Score=34.11

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)