Non-Coding RNA Search

Ova1-OVRM10217H04

Sequence:


               
               ACATGCAAaagttccctggccagggattgaacccaaactgtggcagtgacccaagccaca
gcagtgacaacactggatccttaacctgctagaccaccagagaactcccCAAAATCTTTT
ATTCTAAATCAGTAATATTTCTTTGGGATAAAAGAATGTTCTTGGTTCCTTCAGATTTAC
TTCTGACTTTCCCACAGACATTAGGCATTTTGTGAGAATAAACTCTTGGTTGAGGAATGT
AGCATTGGTTGAATGGGCTGAGAAAAGAGCAGAGCCTGGTTTTGTGTCCAAATAGTAGTG
TTTCCTTTATGCAGGAATTCTTTAGAACCTTGAATTTTTTTTGGGAGGGGGGTCTTTTTA
GGCCTCATCCTTTGCATATGGAAGTTCCCAGACTAGGGGTCAAATCAGAGCTGTAACCAA
ATCATGCTGTTTAGTTTAACTTCCTTGTTTTATAGATGTGAATGTTCTGATCTGAAGAAA
GTGAGTGACTTGCTTCAAGTTACGTAAGAGCACAATAATGACAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGCAAaagttccctggccagggattgaacccaaactgtggcagtgacccaagccaca
gcagtgacaacactggatccttaacctgctagaccaccagagaactcccCAAAATCTTTT
ATTCTAAATCAGTAATATTTCTTTGGGATAAAAGAATGTTCTTGGTTCCTTCAGATTTAC
TTCTGACTTTCCCACAGACATTAGGCATTTTGTGAGAATAAACTCTTGGTTGAGGAATGT
AGCATTGGTTGAATGGGCTGAGAAAAGAGCAGAGCCTGGTTTTGTGTCCAAATAGTAGTG
TTTCCTTTATGCAGGAATTCTTTAGAACCTTGAATTTTTTTTGGGAGGGGGGTCTTTTTA
GGCCTCATCCTTTGCATATGGAAGTTCCCAGACTAGGGGTCAAATCAGAGCTGTAACCAA
ATCATGCTGTTTAGTTTAACTTCCTTGTTTTATAGATGTGAATGTTCTGATCTGAAGAAA
GTGAGTGACTTGCTTCAAGTTACGTAAGAGCACAATAATGACAAAAC

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               103-12, , RaveNnA Score=26.12

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               103-12, , RaveNnA Score=26.12