Non-Coding RNA Search

rcol1030b_i17.y1

Sequence:


               
               CCAAAATGGAGAAGAGTGGGCAGCAGCAGCCCGTAGGCCTTAGGAGCATCCTAAGGAGTC
TGTCCAGGCTGAGGGGTTGTCTCAGTGATGAGAACTTTGTCCAGTTCTGCTACTGACATT
AAGTGACGATAAAGTATATCTGAGGAGACAGTGGGCTTCGTGCCTGCCCCCCAGATACCT
GGCCCAACGTGGACACTTGAGGGATGCGCAGGTGGGGGAGGAATGTGTGGTCACGTTGCT
AAGGCCCACGTGCTCTCTCTCGCACAGCGTGCATCGCCTCAAGACCAGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAATGGAGAAGAGTGGGCAGCAGCAGCCCGTAGGCCTTAGGAGCATCCTAAGGAGTC
TGTCCAGGCTGAGGGGTTGTCTCAGTGATGAGAACTTTGTCCAGTTCTGCTACTGACATT
AAGTGACGATAAAGTATATCTGAGGAGACAGTGGGCTTCGTGCCTGCCCCCCAGATACCT
GGCCCAACGTGGACACTTGAGGGATGCGCAGGTGGGGGAGGAATGTGTGGTCACGTTGCT
AAGGCCCACGTGCTCTCTCTCGCACAGCGTGCATCGCCTCAAGACCAGGCCAG

ncRNA annotation: 1 entry(ies)

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               80-148, RF00212;U38; (AL592166.16/42418-42486) : U38B (gnl|combinedlit|LIT1448), 
RaveNnA Score=47.14

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               80-148, RF00212;U38; (AL592166.16/42418-42486) : U38B (gnl|combinedlit|LIT1448), 
RaveNnA Score=47.14

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               col (0.195008)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)