Non-Coding RNA Search

Ss1.1-Pig4-TMW8047A09.3

Sequence:


               
               GGCTCTCTTCAGGACTGATTGACCATCGTGCCTGAAACAGAGGAGGTCATCAATTCAGTT
GAGCTTTTTCTTTGTTTGGCCGGGACGTGCAGCGGCCTGATGTGGGAGCTCATTTCCCAG
ACCAGGGATTGAACCTGGGCCGCAGCAGTGAAAGTGTGGAATCCTGACCACTAGACCCTC
AGGCTGCTCCCAGGGTGAGCTGTTCTTAGCCCTTTTTTTTGTTTGTTTGTTTGTCTTTTT
GTTTTTCTAGGGCCGCTCCTGCAGCATGTGGATGTTCCCAGGCTAGGGGTCTAATTGGAG
CTGTAGTCTCCGGCCTGCGCCGGAGCCACAGCAACGTGGGATCCGAGCCGCATCTGCAAC
CTACACCACAGCTCACGGCAACGCGGGATCCATAACCTACTGAGCAAGGCCAGGGATCGA
ACCCGCAACCTCATCGTTCCTTGTCGGATCCGTCAACCACCGCGTCACGACGGGAACTCC
CTTATCCTTGTTAATGATAATGGAGATGCCACTCTGGGTGTCTTTTAACTCATCTGGCCT
GTCTTAAGCCAATCCAGCCATTGCCATGTATAAACGGGCCTTCCCTGTGTTCTCAGTTTT
TAGCCACTGTCCCAAGTTATTGCCTGGGAGCCGTCTTGCCTGGTGCTTCCCAACAGGTCC
CTGAGTTCCATGTAGTCTGTGTCTGGCACTTAATAAATGCTCGTTATTCCTATGGTTGTT
CAGCGTGTCTTTAAGGCAGCATTTCCAATTATGTCACCCAAATGACATGCTCCTCTCGCA
AAGGTCCTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCTCTTCAGGACTGATTGACCATCGTGCCTGAAACAGAGGAGGTCATCAATTCAGTT
GAGCTTTTTCTTTGTTTGGCCGGGACGTGCAGCGGCCTGATGTGGGAGCTCATTTCCCAG
ACCAGGGATTGAACCTGGGCCGCAGCAGTGAAAGTGTGGAATCCTGACCACTAGACCCTC
AGGCTGCTCCCAGGGTGAGCTGTTCTTAGCCCTTTTTTTTGTTTGTTTGTTTGTCTTTTT
GTTTTTCTAGGGCCGCTCCTGCAGCATGTGGATGTTCCCAGGCTAGGGGTCTAATTGGAG
CTGTAGTCTCCGGCCTGCGCCGGAGCCACAGCAACGTGGGATCCGAGCCGCATCTGCAAC
CTACACCACAGCTCACGGCAACGCGGGATCCATAACCTACTGAGCAAGGCCAGGGATCGA
ACCCGCAACCTCATCGTTCCTTGTCGGATCCGTCAACCACCGCGTCACGACGGGAACTCC
CTTATCCTTGTTAATGATAATGGAGATGCCACTCTGGGTGTCTTTTAACTCATCTGGCCT
GTCTTAAGCCAATCCAGCCATTGCCATGTATAAACGGGCCTTCCCTGTGTTCTCAGTTTT
TAGCCACTGTCCCAAGTTATTGCCTGGGAGCCGTCTTGCCTGGTGCTTCCCAACAGGTCC
CTGAGTTCCATGTAGTCTGTGTCTGGCACTTAATAAATGCTCGTTATTCCTATGGTTGTT
CAGCGTGTCTTTAAGGCAGCATTTCCAATTATGTCACCCAAATGACATGCTCCTCTCGCA
AAGGTCCTAAAA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               185-117, tRNA Glu : RF00005;tRNA; (AJ410870.2/50112-50183), RaveNnA Score=29.5

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               185-117, tRNA Glu : RF00005;tRNA; (AJ410870.2/50112-50183), RaveNnA Score=29.5